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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:21:26 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/transketolase_PC.html
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#====================================
# Aligned_structures: 3
#   1: 1dtwb.pdb
#   2: 1qs0b.pdb
#   3: 1trka.pdb
#
# Length:        413
# Identity:       22/413 (  5.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    156/413 ( 37.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          154/413 ( 37.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dtwb.pdb               1  --------------QTQ-KMN----LFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRC   40
1qs0b.pdb               1  ---------------------ATTTTIQALRSA-D-VLERDDNVVVYGQDVGYFGGVFRC   37
1trka.pdb               1  LPANWESKLPTYTA-KDSAVA----TRKLSETVLEDVYNQLPELIGGSADLT-PS--NLT   52
                                                    t q   sa d vl  dp  v  g Dv  fg  frc

1dtwb.pdb              41  TVG----------LRDKYGK-DRVFNTPLCEQGIVGFGIGIAV-T-GATAIAEIQFADYI   87
1qs0b.pdb              38  TEG----------LQTKYGK-SRVFDAPISESGIVGTAVG-GA-Y-GLRPVVEIQFADYF   83
1trka.pdb              53  RWKEALDFQPPSS--GSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGT-FLNFV  109
                           t g             kygk  Rvf  pi E givg   G  a   g  p  ei Fady 

1dtwb.pdb              88  FPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWG-CV--GHGALYHSQ-SPEAFFAHCPG  143
1qs0b.pdb              84  YPASDQIVSE-ARLRYRSAGEFIAPL-TLR-PCG-GG--IYGGQTHSQ-SPEA-FTQVCG  135
1trka.pdb             110  SYAAGAVRLS-ALS--------G-HPVIWVATHDSIGVG-EDGPTHQPIETLAHFRSLPN  158
                            pA dqiv e A               t r p g  g    gg tHsq speA F   pg

1dtwb.pdb             144  IKVVIPRSPFQAKGLLLSCIEDK-NPCIFFEPKIL--YRAAA----------------EE  184
1qs0b.pdb             136  LRTV-PSNPYDAKGLLIASIECD-DPVIFLEPKRL--YNG--PFDGHHDRPVTPWSKHPH  189
1trka.pdb             159  IQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLP-------------------QLEG  199
                           i vv P  p  akgll  siE k  P If epk l                       e 

1dtwb.pdb             185  VPI-----EPYNIPLSQAEVIQEG--SDVTLVAWGTQVHVIREVASMAKEKLGVSCEVID  237
1qs0b.pdb             190  SAVPD---GYYTVPLDKAAITRPG--NDVSVLTYGTTVYVAQVAAE----ESGVDAEVID  240
1trka.pdb             200  SSI-ESAS------K-GGYVLQDVANPDIILVATGSEVSLSVEAAKTLAA-KNIKARVVS  250
                           s i           l  a v q g   Dv lva Gt V v  eaA       gv aeVid

1dtwb.pdb             238  LRTII-----PWDVDTICKSVIKT-GRLLISHEAPLTGGFASEISSTVQEECFLNLEAPI  291
1qs0b.pdb             241  LRSLW-----PLDLDTIVESVKKT-GRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPI  294
1trka.pdb             251  LPDFFTFDKQ--PLEYRLSVLP-DNVPIMSVEVLATTC--WGKYA--------------H  291
                           Lr          dldti  sv  t gr   vhea  Tc    e                i

1dtwb.pdb             292  SRVCGYDTPFPHIFEPF----YIPDKWKCYDALRKMINY--------------  326
1qs0b.pdb             295  ERVTGWDTPYPHAQEWA----YFPGPSRVGAALKKVEV---------------  328
1trka.pdb             292  QSFGIDRFG-ASGKAPEVFKFFGFTPEGVAERAQKTIAFYKGDKLISPLKKAF  343
                            rv g dtp ph  ep     y p p  v  al K i                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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