################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:44:19 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/transketolase.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1l8aa.pdb
#   2: 1trka.pdb
#
# Length:        467
# Identity:       71/467 ( 15.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     71/467 ( 15.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          195/467 ( 41.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1l8aa.pdb               1  ISNYINTIPVEEQPEYPGN--LELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSS   58
1trka.pdb               1  -------------------QFTDIDKLAVSTIRILAVDTVSKAN------SGHPGAPLGM   35
                                                        S IR  A  TV  A        GH       

1l8aa.pdb              59  ATIYDVCFNHFFRAR------NEQDGGDLVY-FQGHISPGVYARAFLEGRLTQ-EQLDNF  110
1trka.pdb              36  APAAHVLWSQM-RM-NPTNPDWI-NR-DRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQF   91
                           A    V      R              D      GH     Y    L G     E L  F

1l8aa.pdb             111  RQEVHGN-GLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRG---LKDT-S  165
1trka.pdb              92  RQL---GSRTPGHPEFE-L-PGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPG-FTLS  145
                           RQ           P            T   G G   A   A     L          T S

1l8aa.pdb             166  KQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVT--GNGKIINEL  223
1trka.pdb             146  DNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDE----DV  201
                               Y FLGDG   E  S  A   A   KL NL      N    DG              

1l8aa.pdb             224  EGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFF  283
1trka.pdb             202  AKRYEAYGWEVLYVE---------------------------------------------  216
                               E  GW V  V                                              

1l8aa.pdb             284  GKYPETAALVADWTDEQIWALNRGGH-DPKKIYAAFKKAQETKGKATVILAHTIKGYGMG  342
1trka.pdb             217  -----------------------NGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYGSL  253
                                                   G  D   I  A   A   K K T I   T  GYG  

1l8aa.pdb             343  DAA-------------MDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQ-  388
1trka.pdb             254  ---HAGSHSVHGAPLKADDVKQLKSKFGFN--PDK----SFVVP---QEVYDHYQKTILK  301
                                            D V      F                     E           

1l8aa.pdb             389  KLHGYLPSRQPNFTEK-------------------------------  404
1trka.pdb             302  PGV-------------EANNKWNKLFSEYQKKFPELGAELARRLSGQ  335
                                                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################