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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 22:02:43 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/tim.html
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#====================================
# Aligned_structures: 10
#   1: 1amk.pdb
#   2: 1aw2a.pdb
#   3: 1htia.pdb
#   4: 1tcda.pdb
#   5: 1tima.pdb
#   6: 1trea.pdb
#   7: 1ydva.pdb
#   8: 1ypia.pdb
#   9: 2btma.pdb
#  10: 5tima.pdb
#
# Length:        260
# Identity:       45/260 ( 17.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     70/260 ( 26.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           17/260 (  6.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1amk.pdb                1  SAKPQPIAAANWKCNGTTASIEKLVQVFNEHT-ISHDVQCVVAPTFVHIPLVQAKLR--N   57
1aw2a.pdb               1  ---RHPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAG   57
1htia.pdb               1  APSRKFFVGGNWKMNGRKQSLGELIGTLNAAK-VPADTEVVCAPPTAYIDFARQKLD---   56
1tcda.pdb               1  --KPQPIAAANWKCNGSESLLVPLIETLNAAT-FDHDVQCVVAPTFLHIPMTKARLT--N   55
1tima.pdb               1  -APRKFFVGGNWKMNGKRKSLGELIHTLDGAK-LSADTEVVCGAPSIYLDFARQKLD---   55
1trea.pdb               1  --MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAE--G   56
1ydva.pdb               1  ---RKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQ---   54
1ypia.pdb               1  --ARTFFVGGNFKLNGSKQSIKEIVERLNTAS-IPENVEVVICPPATYLDYSVSLVK--K   55
2btma.pdb               1  ---RKPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAAD--G   55
5tima.pdb               1  -SKPQPIAAANWKCNGSQQSLSELIDLFNSTS-INHDVQCVVASTFVHLAMTKERLS--H   56
                                     NwK NG                                            

1amk.pdb               58  PKYVISAENAI-AKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEA  116
1aw2a.pdb              58  SAIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFL  117
1htia.pdb              57  PKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHA  116
1tcda.pdb              56  PKFQIAAQNAI-TRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQA  114
1tima.pdb              56  AKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHA  115
1trea.pdb              57  SHIMLGAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVL  116
1ydva.pdb              55  SKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQAS  114
1ypia.pdb              56  PQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFA  115
2btma.pdb              56  TDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAA  115
5tima.pdb              57  PKFVIAAQNAI-AKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAA  115
                                 aqn      Ga TGe S    Kd g      GHsERR    E  e    K    

1amk.pdb              117  CKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGK  176
1aw2a.pdb             118  KENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGK  177
1htia.pdb             117  LAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVK--DWSKVVLAYEPVWAIGTGK  174
1tcda.pdb             115  CAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGK  174
1tima.pdb             116  LAEGLGVIACIGEKLDEREAGITEKVVFQETKAIADNVK--DWSKVVLAYEPVWAIGTGK  173
1trea.pdb             117  KEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGK  176
1ydva.pdb             115  LKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLID--NFDNVILVYEPLWAIGTGK  172
1ypia.pdb             116  LGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVK--DWTNVVVAYEPVWAIGTGL  173
2btma.pdb             116  FTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGK  175
5tima.pdb             116  VASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGK  175
                              g     C GE     e   T  V   q                  aYEP WAIGTGk

1amk.pdb              177  VATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGA  236
1aw2a.pdb             178  AATAEDAQRIHAQIRAHIAEK-SEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGA  236
1htia.pdb             175  TATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGA  234
1tcda.pdb             175  VATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGA  234
1tima.pdb             174  TATPQQAQEVHEKLRGWLKTHVSDAVAVQSRIIYGGSVTGGNCKELASQHDVDGFLVGGA  233
1trea.pdb             177  SATPAQAQAVHKFIRDHIAKV-DANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGA  235
1ydva.pdb             173  TATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNA  232
1ypia.pdb             174  AATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGA  233
2btma.pdb             176  SSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGA  235
5tima.pdb             176  VATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGA  235
                            aTp  Aq  h   R           A    I YGGSv   n        d  G LVGgA

1amk.pdb              237  SLKPEFRDIIDAT-R-----  250
1aw2a.pdb             237  ALDAKSFAAIAKAAAEAKA-  255
1htia.pdb             235  SLKPEFVDIINAK-Q-----  248
1tcda.pdb             235  SLKPEFVEIIEAT-K-----  248
1tima.pdb             234  SLKPEFVDIINAK-H-----  247
1trea.pdb             236  SLKADAFAVIVKAAEAAKQA  255
1ydva.pdb             233  SLKESFVDIIKSA-M-----  246
1ypia.pdb             234  SLKPEFVDIINSR-N-----  247
2btma.pdb             236  SLEPASFLQLVEAGR-----  250
5tima.pdb             236  SLKPEFVDIIKAT-Q-----  249
                           sL       i          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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