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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:27:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/thiolase.html
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#====================================
# Aligned_structures: 2
#   1: 1afwa.pdb
#   2: 1kas.pdb
#
# Length:        514
# Identity:       44/514 (  8.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     44/514 (  8.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          227/514 ( 44.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1afwa.pdb               1  KNSLLEKRP-EDVVIVAANRSAI---------------GKG---------FKGAFK----   31
1kas.pdb                1  ---------KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGL   51
                                       VV                          G            A K    

1afwa.pdb              32  ----------------DV-NTDYLLYNFLNEFIGRFPEP---LRADLNLI-EEVACGNVL   70
1kas.pdb               52  VKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSG--LEITE-ENA-TRIGAAIGSGI  107
                                                                                 A G   

1afwa.pdb              71  NVGA----------------------------GATEHRAACLASGIPYSTPFVALNRQCS  102
1kas.pdb              108  GG--LGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGL-R-GPSISIATACT  163
                                                                       G     P       C 

1afwa.pdb             103  SGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLI-P  161
1kas.pdb              164  SGVHNIGHAARIIAYGDADVMVAGGAEKAST---------------------------PL  196
                           SG       A  I  G  D   A G E                                 

1afwa.pdb             162  MGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS--ICQSDE  219
1kas.pdb              197  GVGGFGAAR----ALS----------------------------TRND----NPQAASRP  220
                                                                                    S  

1afwa.pdb             220  GPRPNVTAESLSSIRPAFIGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQ  279
1kas.pdb              221  W---------DKER-----------DGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFG  260
                                                          DG     L     A             F 

1afwa.pdb             280  TVGVP--PEIM---GVGPAYAIPKVLEATGLQVQDIDIFEINEA-----FAAQALYCIHK  329
1kas.pdb              261  MSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGD-KAEAQAVKT  319
                                         G G A A    L   G     I                        

1afwa.pdb             330  LG-IDLNKVNPRG-GAIALGHPLGCTGARQVATILRELK---------------------  366
1kas.pdb              320  IFGEAASRVL-VSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDF  378
                                   V          GH LG  GA         L                      

1afwa.pdb             367  ----------KDQIGVVSMCIGTGMGAAAIFIKE  390
1kas.pdb              379  VPHEARQVSGM-EYTLCNSFGFGGTNGSLIFKKI  411
                                                  G     IF K 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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