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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:56:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tRNA-synt_2d.html
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#====================================
# Aligned_structures: 2
#   1: 1pysa.pdb
#   2: 1pysb.pdb
#
# Length:        281
# Identity:       46/281 ( 16.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     46/281 ( 16.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          115/281 ( 40.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1pysa.pdb               1  SGGLHPITLMERELVEIFRALGYQAVEGPEVESE-FFNFDALNIPEHHPARDMWDTFWLT   59
1pysb.pdb               1  ----EAPYRKEQRLREVLSGLGFQEVYTYSFMD-PEDARR-FRLD---------PP-RLL   44
                                     E  L E    LG Q V                                L 

1pysa.pdb              60  GEGFRLEGPLGEEVEGR----LLLRTHTSPMQVRYMVAHT-----PPFRIVVPGRVFRFE  110
1pysb.pdb              45  LLNPL------------APEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E   91
                                                  LRTH  P  VR                   GRVFR E

1pysa.pdb             111  QTDATHEAVFHQLEGLVVGEG-----------IAMAHLKGAIYELAQALFGPDSKVRFQP  159
1pysb.pdb              92  -------REETHLAGLLFGEGVGLPWAKERLSG-YFLLKGYLEALFARL-G--LAFRVEA  140
                                       L GL  GEG                LKG    L   L G     R   

1pysa.pdb             160  VYFPFVE--PGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGF  217
1pysb.pdb             141  QAFPFLHPGVSGRVLVE------GEEVGFLGALHPEIAQELE------------L-PPVH  181
                             FPF          V         E G  G  HP   Q                     

1pysa.pdb             218  AFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQFKGVL----  254
1pysb.pdb             182  LFELRLPL-----------------------------PDKP  193
                            F L                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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