################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:19:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/svmp.html
################################################################################################
#====================================
# Aligned_structures: 3
#   1: 1atla.pdb
#   2: 1buda.pdb
#   3: 1iag.pdb
#
# Length:        201
# Identity:       81/201 ( 40.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    178/201 ( 88.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            4/201 (  2.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1atla.pdb               1  -LPQRYIELVVVADHRVFMKYNSDLNTIRTRVHEIVNFINGFYRSLNIHVSLTDLEIWSN   59
1buda.pdb               1  --FQRYMEIVIVVDHSMVKKYNGDSDSIKAWVYEMINTITESYSYLKIDISLSGLEIWSG   58
1iag.pdb                1  NLPQRYIELVVVADRRVFMKYNSDLNIIRTRVHEIVNIINKFYRSLNIRVSLTDLEIWSG   60
                             pQRYiElVvVaDhrvfmKYNsDln IrtrVhEivN In fYrsLnI vSLtdLEIWSg

1atla.pdb              60  EDQINIQSASSDTLNAFAEWRETDLLNRKSHDNAQLLTAIELDEETLGLAPLGTMCDPKL  119
1buda.pdb              59  KDLIDVEASAGNTLKSFGEWRAKDLIHRISHDNAQLLTATDFDGATIGLAYVASMCNPKR  118
1iag.pdb               61  QDFITIQSSSSNTLNSFGEWRERVLLIWKRHDNAQLLTAINFEGKIIGKAYTSSMCNPRS  120
                            D I iqssssnTLnsFgEWRe dLl rksHDNAQLLTAi fdg tiGlAy  sMCnPk 

1atla.pdb             120  SIGIVQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTKGRSYEFSDD  179
1buda.pdb             119  SVGVIQDHSSVNRLVAITLAHEMAHNLGVSHDEGSCSCGGKSCIMSPSISDETIKYFSDC  178
1iag.pdb              121  SVGIVKDHSPINLLVAVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTPGRSYEFSDD  180
                           SvGivqDHSpiNlLvavTmAHElgHNLGmeHDgkdClrGaslCIMrPglt grsyeFSDd

1atla.pdb             180  SMHYYERFLKQYKPQCILNKP  200
1buda.pdb             179  SYIQCRDYISKENPPCILN--  197
1iag.pdb              181  SMGYYQKFLNQYKPQCILNKP  201
                           Sm yy  fl qykPqCILN  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################