################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 22:00:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/subt.html
################################################################################################
#====================================
# Aligned_structures: 8
#   1: 1a1ye.pdb
#   2: 1bh6a.pdb
#   3: 1dbia.pdb
#   4: 1gci.pdb
#   5: 1meea.pdb
#   6: 1sup.pdb
#   7: 1thm.pdb
#   8: 2prk.pdb
#
# Length:        325
# Identity:       46/325 ( 14.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     81/325 ( 24.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           95/325 ( 29.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a1ye.pdb               1  A----QTV-------PYGIPLIK-----------ADKVQAQGF-KGANVKVAVLDTGIQA   37
1bh6a.pdb               1  A----QTV-------PYGIPLIK-----------ADKVQAQGY-KGANVKVGIIDTGIAS   37
1dbia.pdb               1  ----WTPNDTYYQGYQYGPQNTY-----------TDYAWDV-TKGSSGQEIAVIDTGVDY   44
1gci.pdb                1  A----QSV-------PWGISRVQ-----------APAAHNRGL-TGSGVKVAVLDTGIST   37
1meea.pdb               1  A----QSV-------PYGISQIK-----------APALHSQGY-TGSNVKVAVIDSGIDS   37
1sup.pdb                1  A----QSV-------PYGVSQIK-----------APALHSQGY-TGSNVKVAVIDSGIDS   37
1thm.pdb                1  ----YTPNDPYFSSRQYGPQKIQ-----------APQAWDI-A-EGSGAKIAIVDTGVQS   43
2prk.pdb                1  -AAQ-TNA-------PWGLARISSTSPGTSTYYY------DES-AGQGSCVYVIDTGIEA   44
                                            G                           g        D G   

1a1ye.pdb              38  SHPDL--NVVGGASFVAGEA--Y-NTDGNGHGTHVAGTVAAL-DNTTGVLGVAPSVSLYA   91
1bh6a.pdb              38  SHTDL--KVVGGASFVSGES--Y-NTDGNGHGTHVAGTVAAL-DNTTGVLGVAPNVSLYA   91
1dbia.pdb              45  THPDLDGKVIKGYDFV--DNDYD-PMDLNNHGTHVAGIAAAETNNATGIAGMAPNTRILA  101
1gci.pdb               38  -HPDL--NIRGGASFVPGEP--S-TQDGNGHGTHVAGTIAAL-NNSIGVLGVAPSAELYA   90
1meea.pdb              38  SHPDL--NVRGGASFVPSET--NPYQDGSSHGTHVAGTIAAL-NNSIGVLGVAPSASLYA   92
1sup.pdb               38  SHPDL--KVAGGASMVPSET--NPFQDNNSHGTHVAGTVAAL-NNSIGVLGVAPSASLYA   92
1thm.pdb               44  NHPDLAGKVVGGWDFV--DNDST-PQNGNGHGTHCAGIAAAVTNNSTGIAGTAPKASILA  100
2prk.pdb               45  SHPEFEGRAQMVKTY---YY--S-SRDGNGHGTHCAGTVGS-R-----TYGVAKKTQLFG   92
                            Hpdl      g              d n HGTH AG  aa         G Ap     a

1a1ye.pdb              92  VKVLNSSGSGSYSGIVSGIEWATTNG--------MDVINMSLGGASGSTAMKQAVDNAYA  143
1bh6a.pdb              92  IKVLNSSGSGSYSAIVSGIEWATQNG--------LDVINMSLGGPSGSTALKQAVDKAYA  143
1dbia.pdb             102  VRALDRNGSGTLSDIADAIIYAADSG--------AEVINLSLGCDCHTTTLENAVNYAWN  153
1gci.pdb               91  VKVLGASGSGSVSSIAQGLEWAGNNG--------MHVANLSLGSPSPSATLEQAVNSATS  142
1meea.pdb              93  VKVLDSTGSGQYSWIINGIEWAISNN--------MDVINMSLGGPTGSTALKTVVDKAVS  144
1sup.pdb               93  VKVLGADGSGQYSWIINGIEWAIANN--------MDVINMSLGGPSGSAALKAAVDKAVA  144
1thm.pdb              101  VRVLDNSGSGTWTAVANGITYAADQG--------AKVISLSLGGTVGNSGLQQAVNYAWN  152
2prk.pdb               93  VKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKG-VVASLSLGG-GYSSSVNSAAARLQS  150
                           v vL   GSG  s i  g   a              V   SLG          av  a  

1a1ye.pdb             144  RGVVVVAAAGNSGSSGNTNT-IGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGA  202
1bh6a.pdb             144  SGIVVVAAAGNSGNSGSQNT-IGYPAKYDSVIAVGAVDSNKNRASFSSVGSELEVMAPGV  202
1dbia.pdb             154  KGSVVVAAAGNN--------------SYENVIAVGAVDQYDRLASFSNYGTWVDVVAPGV  199
1gci.pdb              143  RGVLVVAASGNSGA----GS-ISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV  197
1meea.pdb             145  SGIVVAAAAGNEGSSGSTST-VGYPAKYPSTIAVGAVNSANQRASFSSAGSELDVMAPGV  203
1sup.pdb              145  SGVVVVAAAGNEGTSGSSST-VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGV  203
1thm.pdb              153  KGSVVVAAAGNAGN----TA-PNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDVAAPGS  207
2prk.pdb              151  SGVMVAVAAGNNNA----DARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGT  206
                            G  V aAaGN                y    aVga d      SFS  G      aPG 

1a1ye.pdb             203  GVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------  256
1bh6a.pdb             203  SVYSTYPSNTYTSLNGTSMASPHVAGAAALILSKYPTLSASQVRNRLSSTATNL------  256
1dbia.pdb             200  DIVSTITGNRYAYMSGTSMASPHVAGLAALLASQG--RNNIEIRQAIEQTADKI------  251
1gci.pdb              198  NVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL------  251
1meea.pdb             204  SIQSTLPGGTYGAYNGTSMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYL------  257
1sup.pdb              204  SIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL------  257
1thm.pdb              208  SIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQG--RSASNIRAAIENTADKI------  259
2prk.pdb              207  SILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLG-KTTAASACRYIADTANKGDLSNIP  265
                              ST     y    GTSMA PHVAG Aal             r     Ta         

1a1ye.pdb             257  -GS-SFYYG-KGLINVE---AAAQ-  274
1bh6a.pdb             257  -GD-SFYYG-KGLINVE---AAAQ-  274
1dbia.pdb             252  -SGTGTYFK-YGRINSY---NAVTY  271
1gci.pdb              252  -GS-TNLYG-SGLVNAE---AATR-  269
1meea.pdb             258  -GS-SFYYG-KGLINVQ---AAAQ-  275
1sup.pdb              258  -GD-SFYYG-KGLINVQ---AAAQ-  275
1thm.pdb              260  -SGTGTYWA-KGRVNAY---KAVQY  279
2prk.pdb              266  F-G-----TVNLLAYNNYQA-----  279
                                      g  n          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################