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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:22:58 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/stpp.html
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#====================================
# Aligned_structures: 2
#   1: 1fjma.pdb
#   2: 1tcoa.pdb
#
# Length:        328
# Identity:      108/328 ( 32.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    108/328 ( 32.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           44/328 ( 13.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fjma.pdb               1  --------LNLDS--------IIGRLLEVQGSRPG-KNVQLTENEIRGLCLKSREIFLSQ   43
1tcoa.pdb               1  VPFPPSHRLTAKEVFDNDGKPRVDILKAHL-----MKEGRLEETVALRIITEGASILRQE   55
                                   L                L          K   L E            I    

1fjma.pdb              44  PILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLA  103
1tcoa.pdb              56  KNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWA  115
                             LL   AP   CGDIHGQ  DL  LFE GG P    YLFLGDYVDRG  S E    L A

1fjma.pdb             104  YKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKI  163
1tcoa.pdb             116  LKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQF  175
                            KI YP   FLLRGNHEC        F  ECK  Y         D F CLP AA      

1fjma.pdb             164  FCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDV--------QGWGE-ND  214
1tcoa.pdb             176  LCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLE--DFGNEKTQEHFTHNTV  233
                            C HGGLSP       IR   R    P  G  CD LWSDP                    

1fjma.pdb             215  RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAK------RQLVTLFSAPNYC-  267
1tcoa.pdb             234  RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNY-L  292
                           RG S       V  FL    L  I RAH     GY    K        L T FSAPNY  

1fjma.pdb             268  GEFDNAGAMMSVDETLMCSFQIL-KPAD  294
1tcoa.pdb             293  DVYNNKAAVLKYENN-VMNIRQFNCSP-  318
                               N  A                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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