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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:07:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/sti.html
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#====================================
# Aligned_structures: 5
#   1: 1avac.pdb
#   2: 1avwb.pdb
#   3: 1tie.pdb
#   4: 1wba.pdb
#   5: 4wbca.pdb
#
# Length:        209
# Identity:       19/209 (  9.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     53/209 ( 25.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           62/209 ( 29.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1avac.pdb               1  ADPPPVHDTDGHELRADANYYVLSANRAHGGGLTMAPGHGRH--CPLFVSQDPNGQHDGF   58
1avwb.pdb               1  ---DFVLDNEGNPLENGGTYYILSDITA-FGGIRAAPTGNER--CPLTVVQSRNELDKGI   54
1tie.pdb                1  ----VLLDGNGEVVQNGGTYYLLPQVWAQGGGVQLAKTGEET--CPLTVVQSPNELSDGK   54
1wba.pdb                1  --DDPVYDAEGNKLVNRGKYTIVSFSD--GAGIDVVATGNENPEDPLSIVKSTRN-I-MY   54
4wbca.pdb               1  -D-DDLVDAEGNLVENGGTYYLLPHIWAHGGGIETAKTGNEP--CPLTVVRSPNEVSKGE   56
                                  D  G    n g Yy l      ggG   a tg e   cPL vv s n    g 

1avac.pdb              59  PVRITPYGVA----PSDKIIRLSTDVRISFRAYTTC--L--QSTEWHIDSELAAG-RRHV  109
1avwb.pdb              55  GTIISSP--Y----RI-RFIAEGHPLSLKFDSFAVIMLCVGIPTEWSVV-ED-LPEGPAV  105
1tie.pdb               55  PIRIESR--L----RS-AFIPDDDKVRIGFAYAPKC--A--PSPWWTVV-E-----GLSV   97
1wba.pdb               55  ATSISSE--DKTPPQP-RNILENMRLKINFATDP----HKG--DVWSVV-DF-QPDGQQL  103
4wbca.pdb              57  PIRISSQ--F----LS-LFIPRGSLVALGFANPPSC--A--ASPWWTVV-DS--PQGPAV  102
                              I s             I         F               W vv       g  v

1avac.pdb             110  ITGP--VKDPSPSGR--ENAFRIEKYSGAEVHEYKLMSCGD-------W-CQDLGVFRDL  157
1avwb.pdb             106  KIGE--NKDA------MDGWFRLERVS--EFNNYKLVFCPQ---D---K-CGDIGISI--  146
1tie.pdb               98  KLSED-ES-----TQF-DYPFKFEQVSD-QLHSYKLLYCEGK---HE-K-CASIGINR--  142
1wba.pdb              104  KLAG-RYPNQ------VKGAFTIQKGS-NTPRTYKLLFCPV----G-SP-CKNIGIST--  147
4wbca.pdb             103  KLSQQ-KLP--E-KD--ILVFKFEKVSHSNIHVYKLLYCQHDEE-DV-KCDQYIGIHR--  152
                           k                   F  e  S      YKL  C           c  iGi    

1avac.pdb             158  KG--GAWFLGAT-E-PYHVVVFKKAPPA-  181
1avwb.pdb             147  DHDDGTRRLVVSKN-KPLVVQFQKLD---  171
1tie.pdb              143  DQ-KGYRRLVVTED-YPLTVVLKKDE---  166
1wba.pdb              148  DP-EGKKRLVVSYQSDPLVVKFHRH----  171
4wbca.pdb             153  DR-NGNRRLVVTEE-NPLELVLLKAKSET  179
                           d   G  rLvv     pl v   k     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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