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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:06:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/slectin.html
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#====================================
# Aligned_structures: 5
#   1: 1a3k.pdb
#   2: 1gana.pdb
#   3: 1hlca.pdb
#   4: 1slta.pdb
#   5: 3gala.pdb
#
# Length:        146
# Identity:       16/146 ( 11.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     35/146 ( 24.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           20/146 ( 13.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a3k.pdb                1  LI--VPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGN----DVAFHFNPRFN---   51
1gana.pdb               1  --ASAGVAVTN-LNLKPGHCVEIKGSIPPDCKGFAVNLGEDA---SNFLLHFNARFDLHG   54
1hlca.pdb               1  -----ELEVKN-MDMKPGSTLKITGSIADGTDGFVINLGQGT---DKLNLHFNPRFS---   48
1slta.pdb               1  ----CGLVASN-LNLKPGECLRVRGEVAADAKSFLLNLGKDD---NNLCLHFNPRFNAHG   52
3gala.pdb               1  -N--VPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLD---   54
                                           Pg    i G        f  nl           lHFNpRf    

1a3k.pdb               52  ENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHR  111
1gana.pdb              55  D--VNKIVCNSKEADAWGSEQREGVFPFQQGAEVMVCFEYQTDKIIIKFSSGDQFSFPVR  112
1hlca.pdb              49  E---STIVCNSLDGSNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDGHELTFPNR  105
1slta.pdb              53  D--VNTIVCNSKDAGAWGAEQRESAFPFQPGSVVEVCISFNQTDLTIKLPDGYEFKFPNR  110
3gala.pdb              55  T---SEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHR  111
                                 iVcNsk    WG E R    pF  G           d       d     f  R

1a3k.pdb              112  VKKLNEISKLGISGDIDLTSASYTMI  137
1gana.pdb             113  KV-LPSIPFLSLEGLQFK-SITTE--  134
1hlca.pdb             106  LG-HSHLSYLSVRGGFNMSSFKLKE-  129
1slta.pdb             111  LN-LEAINYLSAGGDFKIKCVAFE--  133
3gala.pdb             112  LP-LARVRLVEVGGDVQLDSVRIF--  134
                              l     l   G     s      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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