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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 19:59:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/scorptoxin.html
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#====================================
# Aligned_structures: 8
#   1: 1aho.pdb
#   2: 1bmr.pdb
#   3: 1cn2.pdb
#   4: 1lqq.pdb
#   5: 1nrb.pdb
#   6: 1vna.pdb
#   7: 2b3ca.pdb
#   8: 2sn3.pdb
#
# Length:         80
# Identity:       10/ 80 ( 12.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     14/ 80 ( 17.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           26/ 80 ( 32.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aho.pdb                1  VKDGYIVD-D-VNCTYFCG-R---NAYCNEECTK----LKGESGYCQWASPYGNACYCYK   50
1bmr.pdb                1  VRDGYIAQ-P-ENCVYHCFPG---SSGCDTLCKE----KGGTSGHCGFKVGHGLACWCNA   51
1cn2.pdb                1  -KEGYLVDKN-TGCKYECL-KLGDNDYCLRECKQQYGKG--AGGYCYA-----FACWCTH   50
1lqq.pdb                1  VRDAYIAK-N-YNCVYECF-R---DSYCNDLCTK----NGASSGYCQWAGKYGNACWCYA   50
1nrb.pdb                1  KKDGYPVD-S-GNCKYECL-K---DDYCNDLCLE----RKADKGYCYWG---KVSCYCYG   47
1vna.pdb                1  -KEGYLVK-KSDGCKYDCF-WLGKNEHCNTECKA--KNQGGSYGYCYA-----FACWCEG   50
2b3ca.pdb               1  -KDGYLVE-K-TGCKKTCY-KLGENDFCNRECKW--KHIGGSYGYCYG-----FGCYCEG   49
2sn3.pdb                1  -KEGYLVK-KSDGCKYGCL-KLGENEGCDTECKA--KNQGGSYGYCYA-----FACWCEG   50
                              gY        C y C         C   C           GyC         C C  

1aho.pdb               51  LPDHVRTKG-PGRC---H--   64
1bmr.pdb               52  LPDNVGIIV-EGEK-C-HS-   67
1cn2.pdb               51  LYEQAIVWPLPNK-RCS---   66
1lqq.pdb               51  LPDNVPIRV-PGKC---H--   64
1nrb.pdb               48  LPDNSPTKT-SGKC---NPA   63
1vna.pdb               51  LPESTPTYPLPNK-SC----   65
2b3ca.pdb              50  LPDSTQTWPLPNK-TC----   64
2sn3.pdb               51  LPESTPTYPLPNK-SC----   65
                           Lp                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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