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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:06:39 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/prt.html
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#====================================
# Aligned_structures: 3
#   1: 1hgxa.pdb
#   2: 1hmpa.pdb
#   3: 1nula.pdb
#
# Length:        233
# Identity:       11/233 (  4.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     56/233 ( 24.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          110/233 ( 47.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hgxa.pdb               1  ------------------------MDDLERV---LYNQDDIQKRIRELAAELTEFYEDKN   33
1hmpa.pdb               1  SPGVVISDDEPGYDLDLFCIPNHYAEDLERV---FIPHGLIMDRTERLARDVMKEMGGHH   57
1nula.pdb               1  -------------------------------EKYIVTWDMLQIHARKLASRLM-PSEQW-   27
                                                                 d iq r r LA  lm   e   

1hgxa.pdb              34  PVMICVLT-GAVFFYTDLLKHLD---------FQ-LEPDYIICS-SLTISKDLKT-----   76
1hmpa.pdb              58  IVALCVLKG-GYKFFADLLDYIKALNRNSDRSIP-MTVDFIRLKSY-CNDQSTGDIKVIG  114
1nula.pdb              28  KGIIAVSR-GGLVPGALLARELG-----------IRHVDTVCIS-SLKVLKRAEG-----   69
                            v icVl   g  f adLl  l               vD i  s s    k         

1hgxa.pdb              77  -----NIEGRHVLVVEDIIDTG-LTMYQLLNNLQMRKPASLKVCTLCDKDIGKKAYDV--  128
1hmpa.pdb             115  GDDLSTLTGKNVLIVEDIIDTG-KTMQTLLSLVRQYNPKMVKVASLLVKRTPRSV-GY--  170
1nula.pdb              70  -----DGE--GFIVIDDLVDT-GGTAVAIREMYP-----KAHFVTIFAKPA-------GR  109
                                  e   vlvveDiiDT   Tm  ll           kv tl  K           

1hgxa.pdb             129  -PIDYCGFVVENRYIIGYGFDFHNKYRNLPV--IGILKE--------------  164
1hmpa.pdb             171  -KPDFVGFEIPDKFVVGYALDYNEYFRDLNH--VCVISETGKAKYKA------  214
1nula.pdb             110  PLVDDYVVDIPQDTWIE-------Q------PWDMGVVFV-------PPISGR  142
                              D  gf ip    ig                     e              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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