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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:31:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pili_assembly.html
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#====================================
# Aligned_structures: 2
#   1: 1bf8.pdb
#   2: 1qpxa.pdb
#
# Length:        231
# Identity:       59/231 ( 25.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     59/231 ( 25.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           51/231 ( 22.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bf8.pdb                1  G-VALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKDG--RFIVTPPLFAM   57
1qpxa.pdb               1  -AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRL   59
                             V L  TR       K   L   N      YL Q W EN    K      I TPP    

1bf8.pdb               58  KGKKENTLRILDATNN----QLPQDRESLFWMNVKAIPSMDKSKLTENTLQ-LAIISRIK  112
1qpxa.pdb              60  DPGAKSMVRLSTT---PDISKLPQDRESLFYFNLREI-P------------PIALCTKIK  103
                                   R            LPQDRESLF  N   I                A    IK

1bf8.pdb              113  LYYRPAKL--ALPP-DQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTR------VLE  163
1qpxa.pdb             104  LFYRP-A-AIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGG-SEKQAEEGEFE  160
                           L YRP        P       L            NPTPYY TV  L             E

1bf8.pdb              164  NALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTG-VME--------  205
1qpxa.pdb             161  TVMLSPRSEQTVKSA--NYNTPYLSYINDYGGR---PVLSFICNGSRCSVK  206
                                P  E TVK             INDYG                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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