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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 05:24:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/phoslip.html
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#====================================
# Aligned_structures: 18
#   1: 1a2aa.pdb
#   2: 1ae7.pdb
#   3: 1aokb.pdb
#   4: 1bbc.pdb
#   5: 1bp2.pdb
#   6: 1buna.pdb
#   7: 1cl5a.pdb
#   8: 1clpa.pdb
#   9: 1goda.pdb
#  10: 1jiaa.pdb
#  11: 1p2p.pdb
#  12: 1poba.pdb
#  13: 1pp2r.pdb
#  14: 1ppa.pdb
#  15: 1psj.pdb
#  16: 1vapa.pdb
#  17: 1vip.pdb
#  18: 1vpi.pdb
#
# Length:        145
# Identity:       23/145 ( 15.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     26/145 ( 17.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           36/145 ( 24.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a2aa.pdb               1  NLLQFNKMIKEET-G-KNAI-PFYAFYGCYCGGGGNGKPKDGTDRCCFVHDCCYGRLV--   55
1ae7.pdb                1  NLVQFSYLIQCANHGKRP-T-WHYMDYGCYCGAGGSGTPVDELDRCCKIHDDCYDEAG--   56
1aokb.pdb               1  NLFQFAKMINGKL-G-AFSV-WNYISYGCYCGWGGQGTPKDATDRCCFVHDCCYGRVR--   55
1bbc.pdb                1  NLVNFHRMIKLTT-GKEA-A-LSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKR   57
1bp2.pdb                1  ALWQFNGMIKCKI-PSSE-PLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAK--   56
1buna.pdb               1  NLINFMEMIRYTIPCEKT-W-GEYADYGCYCGAGGSGRPIDALDRCCYVHDNCYGDAE--   56
1cl5a.pdb               1  SLLEFGKMILEET-G-KLAI-PSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNLP--   55
1clpa.pdb               1  SLFELGKMILQET-G-KNPA-KSYGAYGCNCGVLGRGKPKDATDRCCYVHKCCYKKLT--   55
1goda.pdb               1  SMYQLWKMILQET-G-KNAV-PSYGLYGCNCGVGSRGKPKDATDRCCFVHKCCYKKLT--   55
1jiaa.pdb               1  HLLQFRKMIKKMT-G-KEPV-VSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKVT--   55
1p2p.pdb                1  ALWQFRSMIKCAI-PGSH-PLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAK--   56
1poba.pdb               1  NLYQFKNMIQCTV-PSRS-W-WDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAE--   55
1pp2r.pdb               1  SLVQFETLIMKIA-G-RSGL-LWYSAYGCYCGWGGHGLPQDATDRCCFVHDCCYGKAT--   55
1ppa.pdb                1  SVLELGKMILQET-G-KNAI-TSYGSYGCNCGWGHRGQPKDATDRCCFVHKCCYKKLT--   55
1psj.pdb                1  SLIQFETLIMKVA-K-KSGM-FWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVT--   55
1vapa.pdb               1  NLFQFEKLIKKMT-G-KSGM-LWYSAYGCYCGWGGQGRPKDATDRCCFVHDCCYGKVT--   55
1vip.pdb                1  NLFQFAEMIVKMT-G-KNPL-SSYSDYGCYCGWGGKGKPQDATDRCCFVHDCCYEKVK--   55
1vpi.pdb                1  NLFQFGDMILQKT-G-KEAV-HSYAIYGCYCGWGGQGRAQDATDRCCFAQDCCYGRVN--   55
                                   I                 YGC CG g  G p D  DRCC  h  CY      

1a2aa.pdb              56  -----N----C---NTKSDIYSYSLKEGYITCG-K-GTNCEEQICECDRVAAECFRRNLD  101
1ae7.pdb               57  K----K----GCFP--KMSAYDYYCGENGPYCRNI-KKKCLRFVCDCDVEAAFCFAKA--  103
1aokb.pdb              56  -----G----C---NPKLAIYYYSFKKGNIVCG-K-NNGCLRDICECDRVAANCFHQNKN  101
1bbc.pdb               58  -----G----C---GTKFLSYKFSNSGSRITCA-K-QDSCRSQLCECDKAAATCFARNKT  103
1bp2.pdb               57  KLDSCKV-LVD---NPYTNNYSYSCSNNEITCSSE-NNACEAFICNCDRNAAICFSKV--  109
1buna.pdb              57  KK--HK----C---NPKTQSYSYKLTKRTIICYGAAG-TCARIVCDCDRTAALCFGNS--  104
1cl5a.pdb              56  -----D----C---NPKSDRYKYKRVNGAIVCE-K-GTSCENRICECDKAAAICFRQNLN  101
1clpa.pdb              56  -----G----C---NPKKDRYSYSWKDKTIVCG-E-NNSCLKELCECDKAVAICLRENLN  101
1goda.pdb              56  -----D----C---SPKTDSYSYSWKDKTIVCG-D-NNPCLQEMCECDKAVAICLRENLD  101
1jiaa.pdb              56  -----G----C---DPKWDDYTYSWKNGTIVCG-G-DDPCKKEVCECDKAAAICFRDNLK  101
1p2p.pdb               57  NLDSCK-FLVD---NPYTESYSYSCSNTEITCNSK-NNACEAFICNCDRNAAICFSKA--  109
1poba.pdb              56  K---IS---GC---WPYFKTYSYECSQGTLTCKGG-NNACAAAVCDCDRLAAICFAGA--  103
1pp2r.pdb              56  -----D----C---NPKTVSYTYSEENGEIICG-G-DDPCGTQICECDKAAAICFRDNIP  101
1ppa.pdb               56  -----D----C---NHKTDRYSYSWKNKAIICE-E-KNPCLKEMCECDKAVAICLRENLD  101
1psj.pdb               56  -----G----C---DPKMDVYSFSEENGDIVCG-G-DDPCKKEICECDRAAAICFRDNLT  101
1vapa.pdb              56  -----G----C---NPKMDIYTYSVDNGNIVCG-G-TNPCKKQICECDRAAAICFRDNLK  101
1vip.pdb               56  -----S----C---KPKLSLYSYSFQNGGIVCG-D-NHSCKRAVCECDRVAATCFRDNLN  101
1vpi.pdb               56  -----D----C---NPKTATYTYSFENGDIVCG-D-NDLCLRAVCECDRAAAICLGENVN  101
                                               Y          C       C    C CD   A C      

1a2aa.pdb             102  TYNNGYMFYRDSKCTETSEEC----  122
1ae7.pdb              104  PYNNANWNIDTKKR-C------Q--  119
1aokb.pdb             102  TYNANYKFLSSSRC-RQTGEKC---  122
1bbc.pdb              104  TYNKKYQYYSNKHC-RGSTPRC---  124
1bp2.pdb              110  PYNKEHKNLDKKNC-----------  123
1buna.pdb             105  EYIEGHKNIDTARF-C------Q--  120
1cl5a.pdb             102  TYSKKYMLYPDFLC-KGELKC----  121
1clpa.pdb             102  TYNKKYRYYLKPLC-KKADAC----  121
1goda.pdb             102  TYNKNYKIYPKPLC-KKADAC----  121
1jiaa.pdb             102  TYKKRYMAYPDILC-SSKSEKC---  122
1p2p.pdb              110  PYNKEHKNLDTKKY-C---------  124
1poba.pdb             104  PYNDNDYNINLKAR-C---------  118
1pp2r.pdb             102  SYDNKYWLFPPKDC-REEPEPC---  122
1ppa.pdb              102  TYNKKYKAYFKLKC-KKPDTC----  121
1psj.pdb              102  LYNDKKYWAFGAKN-CPQEESE-PC  124
1vapa.pdb             102  TYDSKTYWKYPKKN-CKEESEP-C-  123
1vip.pdb              102  TYDKKYHNYPPSQC-TGTEQC----  121
1vpi.pdb              102  TYDKNYEYYSISHC-TEESEQC---  122
                            Y                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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