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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 08:43:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pentraxin.html
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#====================================
# Aligned_structures: 4
#   1: 1gnha.pdb
#   2: 1hasa.pdb
#   3: 1lima.pdb
#   4: 1saca.pdb
#
# Length:        232
# Identity:       39/232 ( 16.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    105/232 ( 45.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           34/232 ( 14.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gnha.pdb               1  --QTDMSRKAFVFPKESDTSYVSLKAPLTKPL--KAFTVCLHFYTELSSTRGYSIFSYAT   56
1hasa.pdb               1  --QTDLTGKVFVFPRQSETDYVKLIPRLDKPL--QNFTVCFRAYSDL-S-RPHSLFSYNT   54
1lima.pdb               1  LEEGEITSKVKFPPS-SSPSFPRLVMVGTLP-DLQEITLCYWFKVNRL-KGTLHMFSYAT   57
1saca.pdb               1  --HTDLSGKVFVFPRESVTDHVNLITPLEKPL--QNFTLCFRAYSDL-S-RAYSLFSYNT   54
                              td   KvfvfP  S t  v L   l kP   q fT C   y  l   r  s FSY T

1gnha.pdb              57  KRQDNEILIFWSKDIGYSFTV--GGSEILFEVPEVTV----APVHICTSWESASGIVEFW  110
1hasa.pdb              55  EYGENELLIYKERIGEYELYI--GNQGTKVRGVEEFA----SPVHFCTSWESSSGIAEFW  108
1lima.pdb              58  AKKDNELLTLIDEQGDFLFNVHGAPQLKVQCPNK---IHIGKWHHVCHTWSSWEGEATIA  114
1saca.pdb              55  QGRDNELLVYKERVGEYSLYI--GRHKVTSKVIEKFP----APVHICVSWESSSGIAEFW  108
                              dNElL      g y      g         e        pvH C sWeS sGiaefw

1gnha.pdb             111  VDGKPRVRK--SLKKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSP  168
1hasa.pdb             109  VNGKPWVKK--GLNKGYTVKNKPSIILGQEQDNYGGGFDNYQSFVGEIGDLNMWDSVLTP  166
1lima.pdb             115  VDGFHCKGNATGIAVGRTLSQGGLVVLGQDQDSVGGKFDATQSLEGELSELNLWNTVLNH  174
1saca.pdb             109  INGTPLVKK--GLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPP  166
                           v G p v k  gl  Gytv     i LGQeQDs GG Fd  QS vGeig lnmWd VL p

1gnha.pdb             169  DEINTIYL---G--GPFSPNVLNWRALKYEVQGEVFTKPQLWP---------  206
1hasa.pdb             167  EEIKSVYQ---G--VPLEPNILDWQALNYEMNGYAVIRPRCVA-LSSYNKIS  212
1lima.pdb             175  EQIKYLSKCAHPSERHIYGNIIQWDKTQFKAYDGVVLSPNEICA--------  218
1saca.pdb             167  ENILSAYQ---G--TPLPANILDWQALNYEIRGYVIIKPLVWV---------  204
                           e I   y    g   p   Nil W al ye  g v   P             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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