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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:49:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pec_lyase.html
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#====================================
# Aligned_structures: 4
#   1: 1idk.pdb
#   2: 1qcxa.pdb
#   3: 2bspa.pdb
#   4: 2pec.pdb
#
# Length:        509
# Identity:       24/509 (  4.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     84/509 ( 16.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          253/509 ( 49.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1idk.pdb                1  ---VGVSG--SAEGFA---KGVTGG--GSA---TPVYPDTIDELVSYLG----DD-----   38
1qcxa.pdb               1  ---AGVVG--AAEGFA---HGVTGG--GSA---SPVYPTTTDELVSYLG----DN-----   38
2bspa.pdb               1  ADLGHQTLGSNDGWGAYST-GTTGG--SKASSSNVYTVSNRNQLVSALGKET-NT-----   51
2pec.pdb                1  -------A-TDTGGYA---A-TAGGNVTGA---VSKTATSMQDIVNIID---AARLDANG   42
                                        g A      tGG    A             lVs lg           

1idk.pdb               39  -------EARVIVLTKTFDFTDS---EGTTTG--TGCAPWGTASACQVAIDQDD------   80
1qcxa.pdb              39  -------EPRVIILDQTFDFTGT---EGTETT--TGCAPWGTASQCQVAINLHS------   80
2bspa.pdb              52  -------TPKIIYIKGTIDMNVDDNLKPLGLNDY--KDPEY-DLD--------KYLKAYD   93
2pec.pdb               43  KKVKGGAYPLVITYTGN--EDSL---I------------------------NAA------   67
                                   p vI    t                                           

1idk.pdb               81  ----------------WC--ENYE-PDAPSVSVEYYNAGTLGITV---TSNKSLIGEGSS  118
1qcxa.pdb              81  ----------------WC--DNYQ-ASAPKVSVTYDKAGILPITV---NSNKSIVGQGTK  118
2bspa.pdb              94  PSTWGKKEPSGTQEEA--RARSQKN----------QKARV-MVDI---PANTTIVGSGTN  137
2pec.pdb               68  ----------------AANICGQW-------SKDP-----RGVEIKEFTKGITIIGANGS   99
                                                                             n  i G g  

1idk.pdb              119  GAIKGKGLRIVSGAENIIIQNIAVTDIN----------------PKYVWGGDAITLDDCD  162
1qcxa.pdb             119  GVIKGKGLRVVSGAKNVIIQNIAVTDIN----------------PKYVWGGDAITVDDSD  162
2bspa.pdb             138  AKVVGGNFQIK--SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNW-NS--QYDNITINGGT  192
2pec.pdb              100  -S-ANFGIWIK-KSSDVVVQNMRIGYLPG---------------GAKD--GDMIRVDDSP  139
                               g g  i     nviiqNi   d                        gD It dd  

1idk.pdb              163  LVWIDHVTTAR-I---------------------GRQHYVLGTSADNRVSLTNNYIDGVS  200
1qcxa.pdb             163  LVWIDHVTTAR-I---------------------GRQHIVLGTSADNRVTISYSLIDGRS  200
2bspa.pdb             193  HIWIDHCTFND-GSRPDSTSPKYYGRKY----QHHDGQTDAS-NGANYITMSYNYYH-D-  244
2pec.pdb              140  NVWVDHNELFAAN------HECDGT---PDNDTTFESAVDIK-GASNTVTVSYNYIHG--  187
                            vWiDH t                                    a N vt synyi    

1idk.pdb              201  DYSATCDGYHYWAIYLD-----GD----ADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNN  251
1qcxa.pdb             201  DYSATCNGHHYWGVYLD-----GS----NDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNN  251
2bspa.pdb             245  ---------HDKSSIFGSSDSK-TSDDGKLKITLHHNRYKNIVQKAPRVR-FGQVHVYNN  293
2pec.pdb              188  ---------VKKVGLDGSSSSD-T----GRNITYHHNYYNDVNARLPLQR-GGLVHAYNN  232
                                    h                      T   Ny      r P v    l Ha NN

1idk.pdb              252  YWYD--------ISGHAFEIGEGGYVLAEGNVFQNVDTVL----ET---Y---EGEAFTV  293
1qcxa.pdb             252  LFHN--------FDGHAFEIGTGGYVLAEGNVFQDVNVVV----ET-P-I---SGQLFSS  294
2bspa.pdb             294  YYEGSTSSSSYP-FSYAWGIGKSSKIYAQNNVIDV-PGLSAAKTIS---VFSGGTALYDS  348
2pec.pdb              233  LYTN--------ITGSGLNVRQNGQALIENNWFEKAINPV----TSRYDG-KNFGTWVLK  279
                                         g a  ig  g  lae Nvf                     g     

1idk.pdb              294  -PS--STAGEVCSTYLGRDCVINGFGS-SGT--F--SEDST-----SFLSDFEGKNIASA  340
1qcxa.pdb             295  -PD--ANTNQQCASVFGRSCQLNAFGN-SGS--M--SGSDT-----SIISKFAGKTIAAA  341
2bspa.pdb             349  G----------------------TLLNGTQINASAANGLSSSVGWT------P-SLHGSI  379
2pec.pdb              280  GNNIT--KPADFSTYS---ITWTADTK-PYV--NADSWTSTGTFPT------V-AYNYSP  324
                                                               s  st                 s 

1idk.pdb              341  SAYTSVASRVVANAGQGNL----------  359
1qcxa.pdb             342  HPPGAIAQWTMKNAGQGK-----------  359
2bspa.pdb             380  DASANVKSNVINQAGAGKLN---------  399
2pec.pdb              325  VSAQCVKDKLPGYAGVGKN-LATLTSTAC  352
                                v       AG Gk           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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