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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 08:19:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ngf.html
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#====================================
# Aligned_structures: 4
#   1: 1b98m.pdb
#   2: 1bet.pdb
#   3: 1bnda.pdb
#   4: 1bndb.pdb
#
# Length:        123
# Identity:       44/123 ( 35.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     63/123 ( 51.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           21/123 ( 17.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b98m.pdb               1  AGELAVCDAVSGWVT--DRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADGGGP   58
1bet.pdb                1  -GEFSVCDSVSVWVG--DKTTATDIKGKEVTVLAEVNI-NNSVFRQYFFETKCRA-----   51
1bnda.pdb               1  -GQLSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPV-SKGQLKQYFYETKCNP-----   53
1bndb.pdb               1  RGEVSVCDSESLWVT--DKSSAIDIRGHQVTVLGEIKT-QNSPVKQYFYETRCKE-----   52
                            Ge sVCDs S WVt  Dk tA D  G  VtVL ev     s   QYF ET C       

1b98m.pdb              59  GAG-------GGGCRGVDRRHWVSECKAKQSYVRALTADAQGRVGWRWIRIDTACVCTLL  111
1bet.pdb               52  ---SNP---VESGCRGIDSKHWNSYCTTTHTFVKALTTDEKQ-AAWRFIRIDTACVCVLS  104
1bnda.pdb              54  ------MGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLT  107
1bndb.pdb              53  ---ARP---VKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALS  106
                                       GCRGiD  HWnS C t q yVrALT d     gWR IRIDT CVC L 

1b98m.pdb             112  SA-  113
1bet.pdb              105  RKA  107
1bnda.pdb             108  IK-  109
1bndb.pdb             107  RK-  108
                            k 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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