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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 08:18:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ndk.html
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#====================================
# Aligned_structures: 4
#   1: 1ndlA.pdb
#   2: 1ndpA.pdb
#   3: 1nlkR.pdb
#   4: 1nueA.pdb
#
# Length:        153
# Identity:       53/153 ( 34.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     92/153 ( 60.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           10/153 (  6.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ndlA.pdb               1  AA-NKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARP   59
1ndpA.pdb               1  -V-NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERP   58
1nlkR.pdb               1  ---AIERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARP   57
1nueA.pdb               1  --ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRP   58
                              n ERTf   KPDGv rGlvG II RfE KGf lVa k    s    e hYa  k RP

1ndlA.pdb              60  FFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHG  119
1ndpA.pdb              59  FFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHG  118
1nlkR.pdb              58  FFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHG  117
1nueA.pdb              59  FFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG  118
                           FF gLV  m SGPVV MV EG nvV   R m G TNPa s pGtIRgDF   vgrNiiHG

1ndlA.pdb             120  SDAVESAEKEIALWFNEKELVTWTPAAKDWIYE  152
1ndpA.pdb             119  SDSVESANREIALWFKPEELLTEVKPNPNLYE-  150
1nlkR.pdb             118  SDSLENAKIEIAYFFRETEIHSYPYQ-------  143
1nueA.pdb             119  SDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE  151
                           SDsvesA  EIalwF   El             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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