################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 21:16:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/mofe.html
################################################################################################
#====================================
# Aligned_structures: 6
#   1: 1mioa.pdb
#   2: 1miob.pdb
#   3: 1qh8a.pdb
#   4: 1qh8b.pdb
#   5: 3mina.pdb
#   6: 3minb.pdb
#
# Length:        682
# Identity:       24/682 (  3.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     41/682 (  6.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          308/682 ( 45.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1mioa.pdb               1  -------------------------------------------------------S----    1
1miob.pdb               1  ---LDATPKEI--------------------------------------------VE---   10
1qh8a.pdb               1  ---------------------------------------------------------TNA    3
1qh8b.pdb               1  SQTIDKINSC-YPLFEQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFR---   56
3mina.pdb                  ------------------------------------------------------------     
3minb.pdb               1  -------------------------------EKYPQDKIDEVFQWTTTKEYQELNFQ---   26
                                                                                       

1mioa.pdb               2  -----ENLKDEILEKYIPKTKKTRSGHIVIKTEETPNP--EIVANTRTVPGIITA-----   49
1miob.pdb              11  -------------------------------------------RKALR---INPAKTCQP   24
1qh8a.pdb               4  TGERNLALIQEVLEVFPETARKERRKHMMVSDPKMKSVGKCIISNRKSQPGVMTV-----   58
1qh8b.pdb              57  -------------------------------------------REALT---VDPAKACQP   70
3mina.pdb               1  SREEVESLIQEVLEVYPEKARKDRNKHLAVN---------CIISNKKSQPGLMTI-----   46
3minb.pdb              27  -------------------------------------------REALT---VNPAKACQP   40
                                                                                       

1mioa.pdb              50  -----------RGCAYAGCKGVVMGPIKDMVHITHG----PIGCSFYTWGGRRFKSKP-E   93
1miob.pdb              25  VGAMYAALGIH-----------------NCLPHSHGSQGCCSYHRTVLSRHFKEP-----   62
1qh8a.pdb              59  -----------RGCAYAGSKGVVFGPIKDMAHISHG----PVGCGQYSRAGRRNYYTGVS  103
1qh8b.pdb              71  LGAVLCSLGFA-----------------NTLPYVHGSQGCVAYFRTYFNRHFKEP-----  108
3mina.pdb              47  -----------RGCAYAGSKGVVWGPIKDMIHISHG----PVGCGQYSRAGRRNYYIGTT   91
3minb.pdb              41  LGAVLCALGFE-----------------KTMPYVHGSQGCVAYFRSYFNRHFREP-----   78
                                                             HG          y             

1mioa.pdb              94  NGTGLNFNEYVFSTDMQESDIVFGGVNKLKDAIHEAYEMFH-PAAIGVYATCPVGLIGDD  152
1miob.pdb              63  --------AMASTSSFTEGASVFGGGSNIKTAVKNIFSLYN-PDIIAVHTTCLSETLGDD  113
1qh8a.pdb             104  GV--DSFGTLNFTSDFQERDIVFGGDKKLSKLIEEMELLFPLTKGITIQSECPVGLIGDD  161
1qh8b.pdb             109  --------IACVSDSMTEDAAVFGGNNNMNLGLQNASALYK-PEIIAVSTTCMAEVIGDD  159
3mina.pdb              92  GV--NAFVTMNFTSDFQEKDIVFGGDKKLAKLIDEVETLFPLNKGISVQSECPIGLIGDD  149
3minb.pdb              79  --------VSCVSDSMTEDAAVFGGQQNMKDGLQNCKATYK-PDMIAVSTTCMAEVIGDD  129
                                            E   VFGG                    I v   C    iGDD

1mioa.pdb             153  ILAVAATASKEIG----IPVHAFSCEGYKGVSQSAGHHIANNTVMTDII-GK--G---N-  201
1miob.pdb             114  LPTYISQMEDAGSIPEGKLVIHTNTPSYVG-SHVTGFANMVQGIVNYLS-E---N---TG  165
1qh8a.pdb             162  ISAVANASSKALD----KPVIPVRCEGFRGVSQSLGHHIANDVVRDWIL-NN--REG-QP  213
1qh8b.pdb             160  LQAFIANAKKDGFVDSSIAVPHAHTPSFIG-SHVTGWDNMFEGFAKTFTADY--Q-G-Q-  213
3mina.pdb             150  IESVSKVKGAELS----KTIVPVRCEGFRGVSQSLGHHIANDAVRDWVL-GK--RDEDTT  202
3minb.pdb             130  LNAFINNSKKEGFIPDEFPVPFAHTPSFVG-SHVTGWDNMFEGIARYFTLKSMDD-K-V-  185
                                              v         G S   G                        

1mioa.pdb             202  K-EQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLTG-------------------  241
1miob.pdb             166  A-KNGKINVIPGFVGP--ADMREIKRLFEAMDIPYIM-FPDTSGVLDGPTTGEYKMYPEG  221
1qh8a.pdb             214  F-ETTPYDVAIIGDYNIGGDAWASRILLEEMGLRVVAQWSG-------------------  253
1qh8b.pdb             214  PGKLPKLNLVTGFETY-LGNFRVLKRMMEQMAVPCSL-LSDPSEVLDTPADGHYRMYSG-  270
3mina.pdb             203  F-ASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSG-------------------  242
3minb.pdb             186  VGSNKKINIVPGFETY-LGNFRVIKRMLSEMGVGYSL-LSDPEEVLDTPADGQFRMYAG-  242
                                             g         e m                             

1mioa.pdb             242  DATYEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCN-FIGVDGIVETLRDMAK  300
1miob.pdb             222  GTKIEDLKDTGNSDLTLSLGSYASDLGAKTLEKKCKVPFKTLRTPIGVSATDEFIMALSE  281
1qh8a.pdb             254  DGTLVEMENTPFVKLNLVHCYRSMNYIARHMEEKHQIPWMEYN-FFGPTKIAESLRKIAD  312
1qh8b.pdb             271  GTTQQEMKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPATEVAIPLGLAATDELLMTVSQ  330
3mina.pdb             243  DGSISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYN-FFGPTKTIESLRAIAA  301
3minb.pdb             243  GTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEGTWKHEVPKLNIPMGLDWTDEFLMKVSE  302
                                           l              e     p        G     E l     

1mioa.pdb             301  CFDD-P--ELTKRTEEVIAEEIAAIQDDLDYFKEKLQ--GKTACLYVGGSRSHTYMNMLK  355
1miob.pdb             282  AT-GKEVPASIEEERGQ-------LIDLMIDAQQY--LQGKKVALLGDPDEIIALSKFII  331
1qh8a.pdb             313  QF-D-D--TIRANAEAVIARYEGQMAAIIAKYRPR--LEGRKVLLYMGGLRPRHVIGAYE  366
1qh8b.pdb             331  LS-GKPIADAL----TL---ERGRLVDMMLDSHTW--LHGKKFGLYGDPDFVMGLTRFLL  380
3mina.pdb             302  KF-D-E--SIQKKCEEVIAKYKPEWEAVVAKYRPR--LEGKRVMLYIGGLRPRHVIGAYE  355
3minb.pdb             303  IS-GQPIPASL----TK---ERGRLVDMMTDSHTW--LHGKRFALWGDPDFVMGLVKFLL  352
                                                                  Gk   L               

1mioa.pdb             356  SFGVDSLVAGFEFAHRDDYEGREVIPTIKIDADSKNIPEITVTPDEQKYRVVIPEDKVEE  415
1miob.pdb             332  ELGAIPKYVVTGTPGMK-------------------------------------------  348
1qh8a.pdb             367  DLGMEIIAAGYEFAHND-------------------------------------------  383
1qh8b.pdb             381  ELGCEPTVILSHNANKR-------------------------------------------  397
3mina.pdb             356  DLGMEVVGTGYEFAHND-------------------------------------------  372
3minb.pdb             353  ELGCEPVHILCHNGNKR-------------------------------------------  369
                            lG                                                         

1mioa.pdb             416  LKKAGVPLSAYG---GMMKEM-----HDGTILIDDMNHHDMEVVLEKLKPDMFFAGIKEK  467
1miob.pdb             349  ------------FQKEIDAMLAEAG-IEGSKVKVEGDFFDVHQWIKNEGVDLLISNTYGK  395
1qh8a.pdb             384  ------------DYDRTLPDL-----KEGTLLFDDASSYELEAFVKALKPDLIGSGIKEK  426
1qh8b.pdb             398  ------------WQKAMNKMLDASPYGRDSEVFINCDLWHFRSLMFTRQPDFMIGNSYGK  445
3mina.pdb             373  ------------DYDRTMKEM-----GDSTLLYDDVTGYEFEEFVKRIKPDLIGSGIKEK  415
3minb.pdb             370  ------------WKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSYGK  417
                                                                            pD        K

1mioa.pdb             468  FVIQKGG-------VLSKQLH-SY-----DYNGPYAGFRGVVNFGHELVNGIYTPAWKMI  514
1miob.pdb             396  FIAREEN-------IPFVRFGFPIMDRYGHYYNPKVGYKGAIRLVEEITNVILD--KIER  446
1qh8a.pdb             427  YIFQKMG-------VPFRQMH-SW-----DYSGPYHGYDGFAIFARDMDMTLNNPAWNEL  473
1qh8b.pdb             446  FIQRDTLAKGKAFEVPLIRLGFPLFDRHHLHRQTTWGYEGAMNIVTTLVNAVLE--KLDS  503
3mina.pdb             416  FIFQKMG-------IPFREMH-SW-----DYSGPYHGFDGFAIFARDMDMTLNNPCWKKL  462
3minb.pdb             418  FIQRDTLHKGKEFEVPLIRIGFPIFDRHHLHRSTTLGYEGAMQILTTLVNSILE--RLDE  475
                           fi             p                    G  G                    

1mioa.pdb             515  ---TPP---WK-----KASSES  525
1miob.pdb             447  E--CTE---EDFEVVR------  457
1qh8a.pdb             474  ---TAP---WL-----------  478
1qh8b.pdb             504  DTSQLGKTDYSFDLVR------  519
3mina.pdb             463  ---QAP---WE-----------  467
3minb.pdb             476  ETRGMQATDYNHDLVR------  491
                                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################