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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 04:55:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/lipocalin.html
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#====================================
# Aligned_structures: 15
# 1: 1aqb.pdb
# 2: 1bbpa.pdb
# 3: 1beba.pdb
# 4: 1bj7.pdb
# 5: 1dzka.pdb
# 6: 1e5pa.pdb
# 7: 1epaa.pdb
# 8: 1ew3a.pdb
# 9: 1exsa.pdb
# 10: 1hn2a.pdb
# 11: 1i4ua.pdb
# 12: 1iiua.pdb
# 13: 1jv4a.pdb
# 14: 1qqsa.pdb
# 15: 2a2ua.pdb
#
# Length: 249
# Identity: 2/249 ( 0.8%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 2/249 ( 0.8%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 132/249 ( 53.0%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1aqb.pdb 1 ----------------V------EVTP-IMTE-------LDTQKVAGTWHTVAMAVS-DV 29
1bbpa.pdb 1 --------------------------Q-TMKG-------LDIQKVAGTWYSLAMAAS-D- 24
1beba.pdb 1 TSDLIPA-----PPL-S-------KVP-LQQN-------FQDNQFQGKWYVVGLAGN-A- 37
1bj7.pdb 1 ----------EEASS-------------TGRN-------FNVEKINGEWHTIILASD-K- 28
1dzka.pdb 1 ----------DKIPD-FVVPG--KCAS-VDRNKLWAEQTPNRNSYAGVWYQFALTNNPY- 45
1e5pa.pdb 1 ----------EEASS-------------TRGN-------LDVAKLNGDWFSIVVASN-K- 28
1epaa.pdb 1 ---------V------------------AIRN-------FDISKISGEWYSIFLASD-V- 24
1ew3a.pdb 1 -----------------------------------------FAELQGKWYTIVIAAD-N- 17
1exsa.pdb 1 -----------------------------VKD-------FDISKFLGFWYEIAFASK--- 21
1hn2a.pdb 1 ---------------NVYHDGACPEVK-PVDN-------FDWSNYHGKWWEVAKYPNSV- 36
1i4ua.pdb 1 -------ER--DCRV-S-------SFR-VKEN-------FDKARFSGTWYAMAKKDPEG- 34
1iiua.pdb 1 --------M--DCRV-S-------SFK-VKEN-------FDKNRYSGTWYAMAKKDPEG- 33
1jv4a.pdb 1 --A---------------------QEEE--AE-------QNLSELSGPWRTVYIGST-N- 26
1qqsa.pdb 1 ---------------------------------------IDPSKIPGEWRIIYAAAD-N- 19
2a2ua.pdb 1 ------------------------------------------FELSGKWITSYIGSS-D- 16
G W
1aqb.pdb 30 SL--LDAKSS--PLKAYVEGLKPTPE---GDLEILLQKRE---N--DKCAQEVLLAKKTD 77
1bbpa.pdb 25 ISL-LDAQSA--PLRVYVEELKPTPE---GDLEILLQKWE---N--GECAQKKIIAEKTK 73
1beba.pdb 38 I--LREDKD-P-Q-KM--YATIYEEKE-DASYNVTSVLFR---K--KKCDYAIRTFVPGC 84
1bj7.pdb 29 REK-IED-NG--NFRLF-L-EQIHVLE--KSLVLKFHTVR---D--EECSELSMVADKTE 75
1dzka.pdb 46 Q--L-------IE-KC--VRNEYSFDG--KQFVIESTGIA--YD--GNLLKRNGKLYPNP 87
1e5pa.pdb 29 REK-IEE-NG--SMRVF-M-QHIDVLE--NSLGFKFRIKE---N--GECRELYLVAYKTP 75
1epaa.pdb 25 KEK-IEE-NG--SMRVF-V-DVIRALD-NSSLYAEYQTKV---N--GECTEFPMVFDKTE 72
1ew3a.pdb 18 LEK-IEE-GG--PLRFY-F-RHIDCYK-NCSEEITFYVIT---N--NQCSKTTVIGYLKG 65
1exsa.pdb 22 ----------E-E-KM--GAMVVELKE--NLLALTTTYYSE-----DHCVLEKVTATEGD 60
1hn2a.pdb 37 E--K-------YG-KC--GWAEYTPEG--KSVKVSNYHVI---H--GKEYFIEGTAYPVG 77
1i4ua.pdb 35 L--F-------LQ-DN--IVAEFSVDE-NGHMSATAKGRVRLLNNWDVCADMVGTFTDTE 81
1iiua.pdb 34 L--F-------LQ-DN--VVAQFTVDE-NGQMSATAKGRVRLFNNWDVCADMIGSFTDTE 80
1jv4a.pdb 27 PEK-IQE-NG--PFRTYFRELVFDDEK--GTVDFYFSVKR---D--GKWKNVHVKATKQD 75
1qqsa.pdb 20 KDK-IVE-GG--PLRNY-Y-RRIECINDCESLSITFYLKD---Q--GTCLLLTEVAKRQE 68
2a2ua.pdb 17 LEK-IGE-NA--PFQVFMRSIEFDDKE--SKVYLNFFSKE---N--GICEEFSLIGTKQE 65
1aqb.pdb 78 I--PAVFKINAL-----------DENQLFLLDTDYDSHLLLCMEN--S--ASP------- 113
1bbpa.pdb 74 I--PAVFKIDAL-----------NENKVLVLDTDYKKYLLFCMEN--S--AEP------- 109
1beba.pdb 85 Q--PGEFTL-GNIKSY--P--GLTSYLVRVVSTNYNQHAMVFFKKV-S--Q-------NR 127
1bj7.pdb 76 K--AGEYSVTYD-----------GFNTFTIPKTDYDNFLMAHLINE-K--D-------GE 112
1dzka.pdb 88 F-GEPHLSIDYE------N--S-FAAPLVILETDYSNYACLYSCID-Y--N--F----GY 128
1e5pa.pdb 76 E--DGEYFVEYD-----------GGNTFTILKTDYDRYVMFHLINF-K--N-------GE 112
1epaa.pdb 73 E--DGVYSLNYD-----------GYNVFRISEFENDEHIILYLVNF-D--K-------DR 109
1ew3a.pdb 66 N--G-TYETQFE-----------GNNIFQPLYIT-SDKIFFTNKND-R--A---GQET-- 102
1exsa.pdb 61 G--PAKFQVTRL---------S-GKKEVVVEATDYLTYAIIDITSL-V--A-------GA 98
1hn2a.pdb 78 DSKIGKIYHKLT----YGG--VTKENVFNVLSTDNKNYIIGYYCKY-D-ED--K----KG 123
1i4ua.pdb 82 D--PAKFKMKYW-G--VASFLQKGNDDHWIIDTDYDTYAVQYSCRLQN--L--D----GT 128
1iiua.pdb 81 D--PAKFKMKYW-G--VASFLQKGNDDHWVVDTDYDTYALHYSCRELN--E--D----GT 127
1jv4a.pdb 76 D--G-TYVADYE-----------GQNVFKIVSLS-RTHLVAHNINV-DK-H-------GQ 111
1qqsa.pdb 69 G--Y-VYVLEFY-----------GTNTLEVIHVS-ENMLVTYVENY-D--G-------ER 103
2a2ua.pdb 66 G--N-TYDVNYA-----------GNNKFVVSYAS-ETALIISNINV-DE-E-------GD 101
1aqb.pdb 114 EHSLVCQSLARTL-EVDDQIREKFEDALKTL-SV----PMRILPAQLE---E-Q------ 157
1bbpa.pdb 110 EQSLVCQCLVRTP-EVDDEALEKFDKALKAL-PM----HIRLSF-NPT---Q-----L-- 152
1beba.pdb 128 -EYFKITLYGRTK-ELTSELKNNFIRFSKSL-GL-PENHIVFPVPIDQ---C-----ID- 174
1bj7.pdb 113 -TFQLMGLYGREP-DLSSDIKERFAQLCEEH-GI-LRENIIDLSNANR---C-------- 157
1dzka.pdb 129 -HSDFSFIFSRSA-NLADQYVKKCEAAFKNI-NVDTT-RFVKTVQGSS-------CPYDT 177
1e5pa.pdb 113 -TFQLMVLYGRTK-DLSSDIKEKFAKLCEAH-GI-TRDNIIDLTKTDR---C-----L-- 158
1epaa.pdb 110 -PFQLFEFYAREP-DVSPEIKEEFVKIVQKR-GI-VKENIIDLTKIDR---C--FQLRG- 159
1ew3a.pdb 103 ----NIVVAGKGN-ALTPEENEILVQFAHEK-KI-PVENILNILATDT---CPE------ 146
1exsa.pdb 99 -VHRTMKLYSRSL-DDNGEALYNFRKITSDH-GF-SETDLYILKHDLT---C-----VKV 146
1hn2a.pdb 124 -HQDFVWVLSRSK-VLTGEAKTAVENYLIGSPVVDSQ-KLVYSDFSEA------------ 168
1i4ua.pdb 129 CADSYSFVFARDPHGFSPEVQKIVRQRQEEL-CL-AR-QYRIITHNGY-------CD--- 175
1iiua.pdb 128 CADSYSFVFSRDPKGLPPEAQKIVRQRQIDL-CL-DR-KYRVIVHNGF-------CS--- 174
1jv4a.pdb 112 -TTELTELFVKL--NVEDEDLEKFWKLTEDK-GI-DKKNVVNFLENENHPH--------- 157
1qqsa.pdb 104 -ITKMTEGLAKGT-SFTPEELEKYQQLNSER-GV-PNENIENLIKTDN---CPP------ 150
2a2ua.pdb 102 -KTIMTGLLGKGT-DIEDQDLEKFKEVTREN-GI-PEENIVNIIERDD---CPA------ 148
1aqb.pdb 158 ---CRV--- 160
1bbpa.pdb 153 EEQC----- 156
1beba.pdb ---------
1bj7.pdb ---------
1dzka.pdb 178 QKT---L-- 181
1e5pa.pdb ---------
1epaa.pdb ---------
1ew3a.pdb ---------
1exsa.pdb 147 LQS---AA- 151
1hn2a.pdb 169 ACK---V-N 173
1i4ua.pdb ---------
1iiua.pdb ---------
1jv4a.pdb ---------
1qqsa.pdb ---------
2a2ua.pdb ---------
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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