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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:55:56 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ligase-CoA.html
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#====================================
# Aligned_structures: 3
#   1: 1eudb.pdb
#   2: 2scub.pdb
#   3: 2scud.pdb
#
# Length:        183
# Identity:       15/183 (  8.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     83/183 ( 45.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           54/183 ( 29.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1eudb.pdb               1  -----------EPIENEAAKYDLKYI--GLDGNIACFVNGAGLAMATCDIIFLNGGKPAN   47
2scub.pdb               1  -----------DPREAQAAQWELNYV--ALDGNIGCMVNGAGLAMGTMDIVKLHGGEPAN   47
2scud.pdb               1  NCPGVITPGEC-------KIGIQPGHIH-KPGKVGIVSRSGTLTYEAVKQTTDYGFGQST   52
                                             a   l y    ldGnigc vngagLam t di  l Gg pan

1eudb.pdb              48  FLDLGGG--VKESQVYQAFKLLTADPKVEAILVNIFGGIVN-AIIANGITKA-RELELKV  103
2scub.pdb              48  FLDVGGG--ATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNV  105
2scud.pdb              53  CVGIGGDPIPGS-NFIDILEMFEKDPQTEAIVMIGEIGGS----AEEEAAAYIKE-HVTK  106
                           fld GGg       v  afk    DpkveAilvnifgGiv    ia gi  a  E  v v

1eudb.pdb             104  PLVVRLEGT-------------------NVHEAQNILTNSGLPITSAVDLEDAAKKAVAS  144
2scub.pdb             106  PVVVRLEGN-------------------NAELGAKKLADSGLNIIAAKGLTDAAQQVVAA  146
2scud.pdb             107  PVVGYIAGVTAPKGKRMGAGAIIAGGKGTADEKFAALE-A-AGVKTVRSLADIGEALKTV  164
                           PvVvrleG                    na e    L  s l i  a  L Daa   va 

1eudb.pdb             145  VTK  147
2scub.pdb             147  V--  147
2scud.pdb                  ---     
                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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