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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:53:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/leukocidin.html
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#====================================
# Aligned_structures: 3
#   1: 1pvl.pdb
#   2: 3lkfa.pdb
#   3: 7ahla.pdb
#
# Length:        327
# Identity:       58/327 ( 17.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    212/327 ( 64.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           62/327 ( 19.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1pvl.pdb                1  AQHITPVSEKKVDD----------------KITLYKTTATSDSDKLKISQILTFNFIKDK   44
3lkfa.pdb               1  EGKITPVSVKKVDD----------------KVTLYKTTATADSDKFKISQILTFNFIKDK   44
7ahla.pdb               1  --------------ADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDK   46
                                                         k Tlykttat dsdk kisqiltfnFIkDK

1pvl.pdb               45  SYDKDTLILKAAGNIYSGYTKPNPKDTISSQFYWGSKYNISINSDSNDSVNVVDYAPKNQ  104
3lkfa.pdb              45  SYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQ  104
7ahla.pdb              47  NHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPR-N  105
                           sydKdtLvlka GnI sgy kpnp d   S lyWgskynvsi s sNdsvnvvDYaPk q

1pvl.pdb              105  NEEFQVQQTVGYSY-GGDINISNG-LSGGG--------K-SFSETINYKQ-ESYRTSLDK  152
3lkfa.pdb             105  NEEFQVQNTLGYTF-GGDISISNGL-------------T-AFSETINYKQ-ESYRTTLSR  148
7ahla.pdb             106  SIDTKEYMSTLTYGFNGNVTGDDT------GKIGGLIGANVSIGHTLKYVQPDFKTILES  159
                           neefqvq t gy   gGdi isng                 fsetinykq esyrT L  

1pvl.pdb              153  RTNFKKIGWDVEAHKIMNNGWGPYGRDSYHSTYGNEMFLGSRQSNLNAGQNFLEYHKMPV  212
3lkfa.pdb             149  NTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPL  208
7ahla.pdb             160  -PTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASS  218
                            tn KkvGW VeahkimNngWGPYgRDS hptYGNelFl  Rqss  AgqNFl  hkmp 

1pvl.pdb              213  LSRGNFNPEFIGVLSRKQNA-AKKSKITVTYQREMDRYTNFWNQLHWIGNNYKDENRATH  271
3lkfa.pdb             209  LSRSNFNPEFLSVLSHRQDG-AKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTF  267
7ahla.pdb             219  LLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRS  278
                           LsrsnFnPeF  Vls  q a akkskItVtYqRemD Yq  Wn   W G NyKd  t t 

1pvl.pdb              272  TSIYEVDWENHTVKLIDTQSKEKNPMS  298
3lkfa.pdb             268  KSTYEIDWENHKVKLLDTKETENNK--  292
7ahla.pdb             279  SERYKIDWEKEEMTN------------  293
                            s YeiDWEnh vkl            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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