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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:40:46 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/kex.html
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#====================================
# Aligned_structures: 3
#   1: 1ac5.pdb
#   2: 1bcsa.pdb
#   3: 1cpy.pdb
#
# Length:        532
# Identity:       57/532 ( 10.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    195/532 ( 36.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          165/532 ( 31.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ac5.pdb                1  LPSSEEYKVAY--ELLPGLSEVPDP-SNIPQMHAGHIP-LRSEDADEQDSSDLEYFFWKF   56
1bcsa.pdb               1  ---HAADRIARLPGQP---------AV-DFDMYSGYITVDE--------GAGRSLFYLLQ   39
1cpy.pdb                1  ------KIKDP--KILGI------D-P-NVTQYTGYLD-VE--------DEDKHFFFWTF   35
                                    a     l               my Gyi   e          d   Ffw f

1ac5.pdb               57  TNNDSNGNVDRPLIIWLNGGPGCSSMD-GALVESGPFRVNS--DGKLYLNEGSWISKGDL  113
1bcsa.pdb              40  EAPE-DAQP-APLVLWLNGGPGCSSVAYGASEELGAFRVKPRGA-GLVLNEYRWNKVANV   96
1cpy.pdb               36  ESRN--DPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIGP--DLKPIGNPYSWNSNATV   90
                           e          PlilWLNGGPGCSS   Ga  elGpfrv p  d kl lNeysWns a v

1ac5.pdb              114  LFIDQPTGTGFSVEQNKDEGKIDKNKFD-EDLEDVTKHFMDFLENYFKIFPEDL--TRKI  170
1bcsa.pdb              97  LFLDSPAGVGFSYT-------NTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYK--YRDF  147
1cpy.pdb               91  IFLDQPVNVGFSYS-------GS--SGV-SNTVAAGKDVYNFLELFFDQFPEYVNKGQDF  140
                           lFlDqP gvGFSy                s      kd y FLe  F  FPey    rdf

1ac5.pdb              171  ILSGESYAGQYIPFFANAILNHNKFSKIDGD--TYDLKALLIGNGWIDPNTQSLSYLPFA  228
1bcsa.pdb             148  YIAGESYAGHYVPELSQLVHRSK--------NPVINLKGFMVGNGLIDDYHDYVGTFEFW  199
1cpy.pdb              141  HIAGASYAGHYIPVFASEILSHK--------DRNFNLTSVLIGNGLTDPLTQYNYYEPMA  192
                            iaGeSYAGhYiP fa  il hk            nLk  liGNGliDp tqy  y pfa

1ac5.pdb              229  ME----KKLIDESNPNFKHLTNAHENCQNLINSA----STDEAAHFS-----YQECENIL  275
1bcsa.pdb             200  WN----HGIVSD---------DTYRRLKEACLHD-------------SFIHPSPACDAAT  233
1cpy.pdb              193  CGEGGEPSVLP--SEECSAMEDSLERCLGLIESCYDSQSVWSC---------VPATIYCN  241
                                                d  erc  li s                    pac    

1ac5.pdb              276  NLLL-S--YTRESSQKGTADCLNMYNFNLKDSYPSCGM----NWPKDISFVSKFFSTPGV  328
1bcsa.pdb             234  DVAT-A--EQG---------NIDMYSLYTPVC------NISYD-PCTERYSTAYYNRRDV  274
1cpy.pdb              242  NAQLAPYQ-RT---------GRNVYDIRKDCEGGN-------LCYPTLQDIDDYLNQDYV  284
                           n  l                  nmY                   p t      y n   V

1ac5.pdb              329  IDSLHLDSDK-----IDHWKECTNSVGTKLS--NPIS--KPSIHLLPGLLESGIEIVLFN  379
1bcsa.pdb             275  QMALHAN---VTGAMNYTWATCSDTINTHWH---D--APRSMLPIYRELIAAGLRIWVFS  326
1cpy.pdb              285  KEAVGAE--------VDHYESCNFDINRNFLFAGDWM--KPYHTAVTDLLNQDLPILVYA  334
                             alha          dhw  C   int      d    kp       Ll  gl I vf 

1ac5.pdb              380  GDKDLICNNKGVLDTIDNLKWG----GIKGFSD-DAVSFDWIHKSKSTDDSEEFSGYVKY  434
1bcsa.pdb             327  GDTDAVVPLTATRYSIGALGLP-----------TTTSWYPWYD-------DQEVGGWSQV  368
1cpy.pdb              335  GDKDFICNWLGNKAWTDVLPWKYDEE-----F-ASQKVRNWTA--S-IT-D-EVAGEVKS  383
                           GDkD icn  g    id L w                   W         d Ev G vk 

1ac5.pdb              435  DRNLTFVSVYNASHMVPFDKSLVSRGIVDIYSN-D-VM-IIDNNGKNVMITT  483
1bcsa.pdb             369  YKGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGK--P-MPGQ---------  408
1cpy.pdb              384  YKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHGGF-SL-------------  421
                           yk lT vsV nagHmVPfd p  al  v                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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