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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 14:42:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/intb.html
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#====================================
# Aligned_structures: 6
#   1: 1afca.pdb
#   2: 1i1b.pdb
#   3: 1irax.pdb
#   4: 2afga.pdb
#   5: 2fgf.pdb
#   6: 2mib.pdb
#
# Length:        162
# Identity:        5/162 (  3.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     11/162 (  6.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           43/162 ( 26.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1afca.pdb               1  ----KPKLLYCSNGGYFLRILPDGTVDGTKDRS--DQ--HIQLQLAAESI------GEVY   46
1i1b.pdb                1  -VRSLNCTLRDS-QQKSLVMSGPYELKALHLQ-GQDMEQQVVFSMSFVQGEESNDKIPVA   57
1irax.pdb               1  SSKMQAFRIWDV-NQKTFYLRNN-QLVAGYLQ-GPNVNLEEKIDVVPIEP------HALF   51
2afga.pdb               1  ----KPKLLYCSNGGHFLRILPDGTVDGTRDRS--DQ--HIQLQLSAESV------GEVY   46
2fgf.pdb                1  ----DPKRLYCKNGGFFLRIHPDGRVDGVREKS--DP--HIKLQLQAEER------GVVS   46
2mib.pdb                1  -IRQLHYRLRDE-QQKSLVLSDPYELKALHLN-GQNINQQVIFSMSFVQGEPSNDKIPVA   57
                                   l        l                                        v 

1afca.pdb              47  IKSTETGQFLAMDTD---GLLYGSQT---------P---NEECLFLERLEENHYNTYISK   91
1i1b.pdb               58  LGLKEKNLYLSCVLKDDKPTLQLESVDPKNYPKKKM---EKRFVFNKIEI-NNKLEFESA  113
1irax.pdb              52  LGIHGGKMCLSCVKSGDETRLQLEAVN--ITDLSENRKQDKRFAFIRSDS-GPTTSFESA  108
2afga.pdb              47  IKSTETGQYLAMDTD---GLLYGSQT---------P---NEECLFLERLEENHYNTYISK   91
2fgf.pdb               47  IKGVCANRYLAMKED---GRLLASKC---------V---TDECFFFERLESNNYNTYRSR   91
2mib.pdb               58  LGLKGKNLYLSCVMKDGTPTLQLESVDPKQYPKKKM---EKRFVFNKIEV-KSKVEFESA  113
                                    L          L                       F             S 

1afca.pdb              92  KHAEKHWFVGLKKNGR--SKLGPRTHFGQKAILFLP-LP---  127
1i1b.pdb              114  QFP--NWYISTSQAENMPVFLG-GTKGGQDITDFTM-QFVSS  151
1irax.pdb             109  ACP--GWFLCTAMEADQPVSLT-NMPDEGVMVTKFYFQED--  145
2afga.pdb              92  KHAEKNWFVGLKKNGS--CKRGPRTHYGQKAILFLP-LPVS-  129
2fgf.pdb               92  KYT--SWYVALKRTGQ--YKLGSKTGPGQKAILFLP-MSA--  126
2mib.pdb              114  EFP--NWYISTSQAEHKPVFLG-NNSGQDII-DFTM-ESVS-  149
                                 W             lg           f        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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