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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:45:55 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/int.html
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#====================================
# Aligned_structures: 5
#   1: 1aoxa.pdb
#   2: 1atza.pdb
#   3: 1auq.pdb
#   4: 1ido.pdb
#   5: 1lfaa.pdb
#
# Length:        232
# Identity:        6/232 (  2.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     21/232 (  9.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           70/232 ( 30.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aoxa.pdb               1  S-------CP----SLIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLI   47
1atza.pdb               1  --------------QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVL   46
1auq.pdb                1  -DISEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVV   59
1ido.pdb                1  ---------------DSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLK-KS-KTLFSLM   43
1lfaa.pdb               1  --------------GNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLS-NT-SYQFAAV   44
                                            D   l DgS s     f   k F       l            

1aoxa.pdb              48  QYANNPRVVFNLNTYKTKE---EMIVATSQTSQYGGD-LTNTFGAIQYARKYAYSAASGG  103
1atza.pdb              47  QYGSITTIDVPWNVVPEKA---HLLSLVDVMQ-REGG-PSQIGDALGFAVRYLTSEMHGA  101
1auq.pdb               60  EYHDGSHAYIGLKDRKRPS---ELRRIASQVK-YAGSQVASTSEVLKYTLFQIFSKI--D  113
1ido.pdb               44  QYSEEFRIHFTFKEFQ---NNPNPRSLVKPIT-QLLG-RTHTATGIRKVVRELFNITNGA   98
1lfaa.pdb              45  QFSTSYKTEFDFSDYV---KRKDPDALLKHVK-HMLL-LTNTFGAINYVATEVFREELGA   99
                           qy                                       t                  

1aoxa.pdb             104  RRSATKVMVVVTDGESH--D-GS-MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLI  159
1atza.pdb             102  RPGASKAVVILVTDVSV--D----SVDAAADAARSNRVTVFPIGIG-DR----Y----DA  146
1auq.pdb              114  RPEASRIALLLMASQEPQRM-SR-NFVRYVQGLKKKKVIVIPVGIG-PH----A----NL  162
1ido.pdb               99  RKNAFKILVVITDGEKF--GDP-LGYEDVIPEADREGVIRYVIGVG-DAF---R-SEKSR  150
1lfaa.pdb             100  RPDATKVLIIITDGEAT--D-S-----GNIDAAK--DIIRYIIGIG-KHF---Q-TKESQ  144
                           R  A k                                    ig g              

1aoxa.pdb             160  KEIKAIASIPTERYFFNVSDEAALLEKA---GTLGEQIFSI-EG-GT-----  201
1atza.pdb             147  AQLRILAGPAGDSNVVKLQRIEDLPTMVTLGNSFLHKL--------------  184
1auq.pdb              163  KQIRLIEKQAPENKAFVLSSVDELEQQR---DEIVSYLCDLAPEAP---PPT  208
1ido.pdb              151  QELNTIASKPPRDHVFQV-N---NFEAL---KTIQNQLREK-----------  184
1lfaa.pdb             145  ETLHKFASKPASEFVKILDTFEKLKDLF---TELQKKIY----V---IE---  183
                                 a                l                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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