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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 23:32:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/il8.html
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#====================================
# Aligned_structures: 11
#   1: 1b3aa.pdb
#   2: 1huma.pdb
#   3: 1il8a.pdb
#   4: 1mgsa.pdb
#   5: 1mi2a.pdb
#   6: 1plfa.pdb
#   7: 1rhpa.pdb
#   8: 1roda.pdb
#   9: 1sdf.pdb
#  10: 1tvxa.pdb
#  11: 2eot.pdb
#
# Length:        109
# Identity:        1/109 (  0.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      2/109 (  1.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           56/109 ( 51.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b3aa.pdb               1  ------PYS-SDTT-------P-CC-----------FAY-IARPLPRAHIKEYFYTS-G-   31
1huma.pdb               1  ---------APMGSD-P----PT------A----CCFSY-TARKLPRNFVVDYYETS-S-   33
1il8a.pdb               1  --------------AK-------EL---RC----QCIKT-YSKPFHPKFIKELRVIESGP   31
1mgsa.pdb               1  ----AS--V-----AT-------EL---RC----QCLQT-LQ-GIHPKNIQSVNVKSPGP   33
1mi2a.pdb               1  --AVVA--S--------------EL---RC----QCLKT-LP-RVDFKNIQSLSVTPPGP   33
1plfa.pdb               1  ---------------------------LQC----VCLKT-TS-GINPRHISSLEVIGAGL   27
1rhpa.pdb               1  --------------------------DLQC----LCVKT-TS-QVRPRHITSLEVIKAGP   28
1roda.pdb               1  -------------------------S--AKELRCQCIKTYSK-PFHPKFIKELRVIESGP   32
1sdf.pdb                1  KP--VS--L--------------SY---RC----PCRFF-ESHV-ARANVKHLKILN-T-   31
1tvxa.pdb               1  -------------------------L--RC----LCIKT-TS-GIHPKNIQSLEVIGKGT   27
2eot.pdb                1  -----------------GPASV-PT----T----CCFNL-ANRKIPLQRLESYRRITSG-   32
                                                                                       

1b3aa.pdb              32  KCSNPAVVFVTR-KNRQVCANPE--KKWVREYINSLEMS----------   67
1huma.pdb              34  LCSQPAVVFQTK-RSKQVCADPS--ESWVQEYVYDLELN----------   69
1il8a.pdb              32  HCANTEIIVKLS-DGRELCLDPK--ENWVQRVVEKFLKRAE-NS-----   71
1mgsa.pdb              34  HCAQTEVIATLK-NGRKACLNPA--SPIVKKIIEKMLNSDK-SN-----   73
1mi2a.pdb              34  HCAQTEVIATLK-GGQKVCLDPE-AP-LVQKIIQKILNKGK-A-----N   73
1plfa.pdb              28  HCPSPQLIATLK-TGRKICLDQQ--NPLYKKIIKRLLKS----------   63
1rhpa.pdb              29  HCPTAQLIATLK-NGRKICLDLQ--APLYKKIIKKLLES----------   64
1roda.pdb              33  HCANTEIIVKLS-DGRELCLDPAS-PIVKKIIEKMLNSD--KS----N-   72
1sdf.pdb               32  PNCALQIVARLKNNNRQVCIDPK--LKWIQEYLEKALN-----------   67
1tvxa.pdb              28  HCNQVEVIATLK-DGRKICLDPD--APRIKKIVQKKLAGD---------   64
2eot.pdb               33  KCPQKAVIFKTK-LAKDICADPK--KKWVQDSMKYLDQKSP--TPKP--   74
                            c                C                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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