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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 21:21:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/igI.html
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#====================================
# Aligned_structures: 9
#   1: 1itbb2.pdb
#   2: 1itbb3.pdb
#   3: 1nct.pdb
#   4: 1tit.pdb
#   5: 1tlk.pdb
#   6: 1vcaa.pdb
#   7: 1wit.pdb
#   8: 1zxq.pdb
#   9: 2ncm.pdb
#
# Length:        145
# Identity:        0/145 (  0.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      1/145 (  0.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           76/145 ( 52.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1itbb2.pdb              1  ------------CYNAQAI-F-KQKLPVAGDGGLVC-PYMEFFKNE---NNELPKLQWYK   42
1itbb3.pdb              1  ---------PTRPVIVSPANE-TMEVDLGSQIQLICNVT-------GQ-L-S-DIAYWKW   40
1nct.pdb                1  -----SKT-TLAARILTKP-R-SMTVYEGESARFSCDTD-------GE-P-V-PTVTWLR   42
1tit.pdb                1  -----------LIEVEKPL-Y-GVEVFVGETAHFEIELS-------EP---D-VHGQWKL   36
1tlk.pdb                1  VAEEK-P--HVKPYFTKTI-L-DMDVVEGSAARFDCKVE-------GY-P-D-PEVMWFK   45
1vcaa.pdb               1  ----------FKIETTP---ESRYLAQIGDSVSLTCSTT-------GC-E-S-PFFSWRT   37
1wit.pdb                1  ----------LKPKILTAS-R-KIKIKAGFTHNLEVDFI-------GA-P-D-PTATWTV   38
1zxq.pdb                1  --------KVFEVHVRP---K-KLAVEPKGSLEVNCSTT-------CN-Q-P-EVGGLET   38
2ncm.pdb                1  --------RVLQVDIVP---S-QGEISVGESKFFLCQVA-------GDAK-D-KDISWFS   39
                                                                                    w  

1itbb2.pdb             43  D--CKPLLLDNIHFSG-VK----------------DRLIVMNVAEKHR-GNYTCHASYTY   82
1itbb3.pdb             41  N--GSVIDEDDPVLGE-DYY-SVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK-NT   95
1nct.pdb               43  K-GQV-LST-SARHQV-TTT-K-----------YKSTFEISSVQASDE-GNYSVVVE-NS   84
1tit.pdb               37  KGQPLTA---SPDCEI-IED-G-----------KKHILILHNCQL--G-MTGEVSFQ-AA   76
1tlk.pdb               46  D--DNPVKE-SRHFQI-DYD-EE----------GNCSLTISEVCGDDD-AKYTCKAV-NS   88
1vcaa.pdb              38  Q-IDSPL-----NGK-VTNE-G-----------TTSTLTMNPVSFGNE-HSYLCTAT-CE   76
1wit.pdb               39  G-DSG-AAL-APELLV-DAK-S-----------STTSIFFPSAKRADS-GNYKLKVK-NE   80
1zxq.pdb               39  S-----L-----NKILLDEQ-A-----------QWKHYLVSNISH--D-TVLQCHFT-CS   72
2ncm.pdb               40  P-NGEKLSPNQQRISV-VWNDD-----------DSSTLTIYNANIDDA-GIYKCVVT-AE   84
                                                                                       

1itbb2.pdb             83  LGKQYPITRVIEFITLE-EN----K  102
1itbb3.pdb             96  ---HGIDAAYIQLIYP----V---T  110
1nct.pdb               85  ---EGKQEAEFTLTIQK--------   98
1tit.pdb               77  -----NAKSAANLKVKE-L------   89
1tlk.pdb               89  ---LGEATCTAELLVETM-------  103
1vcaa.pdb              77  ---SRKLEKGIQVEIYS-FP-KDP-   95
1wit.pdb               81  ---LGEDEAIFEVIVQ---------   93
1zxq.pdb               73  ---GKQESMNSNVSVYQPPR-QVIL   93
2ncm.pdb               85  -D-GTQSEATVNVKIFQ--------   99
                                                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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