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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:21:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/hla.html
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#====================================
# Aligned_structures: 5
#   1: 1hoca.pdb
#   2: 1hsaa.pdb
#   3: 2hlaa.pdb
#   4: 2vaba.pdb
#   5: 3hlaa.pdb
#
# Length:        178
# Identity:      108/178 ( 60.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    130/178 ( 73.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            0/178 (  0.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hoca.pdb               1  GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYW   60
1hsaa.pdb               1  GSHSMRYFHTSVSRPGRGEPRFITVGYVDDTLFVRFDSDAASPREEPRAPWIEQEGPEYW   60
2hlaa.pdb               1  GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYW   60
2vaba.pdb               1  GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYW   60
3hlaa.pdb               1  GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYW   60
                           G HSmRYF T VSRPG gEPR i VGYVDdt FVRFDSDA   R EPRApW EQEGPEYW

1hoca.pdb              61  ERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEG  120
1hsaa.pdb              61  DRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQDAYDG  120
2hlaa.pdb              61  DRNTRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQMMYGCDVGSDGRFLRGYRQDAYDG  120
2vaba.pdb              61  ERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG  120
3hlaa.pdb              61  DGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG  120
                            reT   K   Q  RvdL tL gYYNQS  GSHT Q m GCdvGsD R LRGY Q AYdG

1hoca.pdb             121  RDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNAT  178
1hsaa.pdb             121  KDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKET  178
2hlaa.pdb             121  KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQWRAYLEGTCVEWLRRYLENGKET  178
2vaba.pdb             121  CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNAT  178
3hlaa.pdb             121  KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKET  178
                            DYIAL EDL  WTAADmAAq T  KWE a  AE  rAYLEG CVEWLrRYL NG  T


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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