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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 19:47:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/gtp.html
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#====================================
# Aligned_structures: 8
#   1: 1a4ra.pdb
#   2: 1etu.pdb
#   3: 1ftn.pdb
#   4: 1guaa.pdb
#   5: 1kao.pdb
#   6: 1mh1.pdb
#   7: 1zbda.pdb
#   8: 5p21.pdb
#
# Length:        238
# Identity:        8/238 (  3.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     21/238 (  8.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          101/238 ( 42.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a4ra.pdb               1  --------MQTIKCVVVGDVAVGKTCLLISYTTN-------KFPSEYV-PTVFDNYAVTV   44
1etu.pdb                1  --FERT--KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGI-----T--IN-TSHVEYDT   48
1ftn.pdb                1  ---------IRKKLVIVGDGACGKTCLLIVNSKD-------QFPEVYV-PTVFENYVADI   43
1guaa.pdb               1  --------MREYKLVVLGSGGVGKSALTVQFVQG-------IFVDEYD-PTIEDSYRKQV   44
1kao.pdb                1  --------MREYKVVVLGSGGVGKSALTVQFVTG-------TFIEKYD-PTIEDFYRKEI   44
1mh1.pdb                1  ------GSPQAIKCVVVGDGAVGKTCLLISYTTN-------AFPGEYI-PTVFDNYSANV   46
1zbda.pdb               1  SH------FDYFKILIIGNSSVGKTSFLFRYADD-------SFTPAFVSTVGIDFKVKTI   47
5p21.pdb                1  --------MTEYKLVVVGAGGVGKSALTIQLIQN-------HFVDEYD-PTIEDSYRKQV   44
                                       k    G    GK  l                                 

1a4ra.pdb              45  MIGGEPYTLGLFDTAGQEDYDRLRPLSY-PQTDVFLVCFSVVSP----SSFENVKEKWVP   99
1etu.pdb               49  PT----RHYAHVDCPGHADYVKNMI-TGAAQMDGAILVVAATDG--PMPQT----REHIL   97
1ftn.pdb               44  EVDGKQVELALWDTAGQEDYDRLRPLSY-PDTDVILMCFSIDSP----DSLENIPEKWTP   98
1guaa.pdb              45  EVDCQQCMLEILDTAGTEQFTAMRDLYM-KNGQGFALVYSITAQ----STFND-LQDLRE   98
1kao.pdb               45  EVDSSPSVLEILDTAGTEQFASMRDLYI-KNGQGFILVYSLVNQ----QSFQD-IKPMRD   98
1mh1.pdb               47  MVDGKPVNLGLWDTAGQEDYDRLRPLSY-PQTDVSLICFSLVSP----ASFENVRAKWYP  101
1zbda.pdb              48  YRNDKRIKLQIWDTAGLERYRTITTAYY-RGAG-FIL-YDITNEESFN-A----VQDWST   99
5p21.pdb               45  VIDGETCLLDILDTAGQEEYSAMRDQYM-RTGEGFLCVFAINNT----KSFED-IHQYRE   98
                                   l   DtaG e                                          

1a4ra.pdb             100  EITHHC--PKTPFLLVGTQIDL-RDDPSTIEKLAKNKQKPITPETAEKLARDLK------  150
1etu.pdb               98  LGRQVG--V-PYIIVFLNKCDM-VDD--E----E-------LLELVEMEVRELLSQYDFP  140
1ftn.pdb               99  EVKHFC--PNVPIILVGNKKDL-RNDEHTRRELAKMKQEPVKPEEGRDMANRIG------  149
1guaa.pdb              99  QILRVKDTEDVPMILVGNKCDLED----ER---------VVGKEQGQNLARQWC------  139
1kao.pdb               99  QIIRVKRYEKVPVILVGNKVDLES----ER---------EVSSSEGRALAEEWG------  139
1mh1.pdb              102  EVRHHC--PNTPIILVGTKLDL-RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG------  152
1zbda.pdb             100  QIKTYS-WDNAQVLLVGNKCDE-----DER---------VVSSERGRQLADHLG------  138
5p21.pdb               99  QIKRVKDSDDVPMVLVGNKCDL-A----AR---------TVESRQAQDLARSYG------  138
                                         lvg k D                            a          

1a4ra.pdb             151  ---AVKYVECSALTQ------K--GLKNVFDEAILAALE------PPEPKKSRRCVL-  190
1etu.pdb              141  GD-DTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP--------------------  177
1ftn.pdb              150  ---AFGYMECSAKTK------D--GVREVFEMATRAALQ-------------------  177
1guaa.pdb             140  --NC-AFLESSAKSK------I--NVNEIFYDLVRQINR-------------------  167
1kao.pdb              140  ---C-PFMETSAKSK------T--MVDELFAEIVRQMNYA------------------  167
1mh1.pdb              153  ---AVKYLECSALTQ------R--GLKTVFDEAIRAVLC------PP----------P  183
1zbda.pdb             139  ---F-EFFEASAKDN------I--NVKQTFERLVDVICEKSESLD-------------  171
5p21.pdb              139  ---I-PYIETSAKTR------Q--GVEDAFYTLVREIRQH------------------  166
                                   e SA                 f                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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