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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 22:30:57 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/gluts.html
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#====================================
# Aligned_structures: 14
#   1: 17gsa.pdb
#   2: 1fhe.pdb
#   3: 1glpa.pdb
#   4: 1gsua.pdb
#   5: 1gta.pdb
#   6: 1gtua.pdb
#   7: 1guha.pdb
#   8: 1guka.pdb
#   9: 1gula.pdb
#  10: 1hna.pdb
#  11: 2fhea.pdb
#  12: 2gsra.pdb
#  13: 3gtub.pdb
#  14: 5gsta.pdb
#
# Length:        253
# Identity:       15/253 (  5.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     19/253 (  7.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           61/253 ( 24.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


17gsa.pdb               1  ---MPPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVE-----TWQ-EGSLKA--SCL   49
1fhe.pdb                1  -----PAKLGYWKLRGLAQPVRLFLEYLGEEYEEHLYGRD-----DREKWMSEKFNMGLD   50
1glpa.pdb               1  ----PPYTIVYFPVRGRCEAMRMLLADQGQSWKEEVVTID-----TWM-QGLLKP--TCL   48
1gsua.pdb               1  -----VVTLGYWDIRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPSDWTNEKEKLGLD   55
1gta.pdb                1  ----MSPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERD-----EGDKWRNKKFELGLE   51
1gtua.pdb               1  -----PMILGYWDIRGLAHAIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLD   55
1guha.pdb               1  -A--EKPKLHYFNARGRMESTRWLLAAAGVEFEEKFIKSA-----ED--LDKLRNDGYLM   50
1guka.pdb               1  ------PKLYYFNGRGRMESIRWLLAAAGVEFEEEFLETR-----EQ--YEKMQKDGHLL   47
1gula.pdb               1  -----RPKLHYPNGRGRMESVRWVLAAAGVEFDEEFLETK-----EQ--LYKLQDGNHLL   48
1hna.pdb                1  -----PMTLGYWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLD   55
2fhea.pdb               1  -----PAKLGYWKIRGLQQPVRLLLEYLGEKYEEQIYERD-----DGEKWFSKKFELGLD   50
2gsra.pdb               1  ----PPYTITYFPVRGRCEAMRMLLADQDQSWKEEVVTME-----TW---PPLKP--SCL   46
3gtub.pdb               1  SCE-SSMVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLD   59
5gsta.pdb               1  -----PMILGYWNVRGLTHPIRLLLEYTDSSYEEKRYAMGDAPDYDRSQWLNEKFKLGLD   55
                                     Y   rG     R  L        E                          

17gsa.pdb              50  YGQLPAFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRCKYISLIY  109
1fhe.pdb               51  LPNLPYYIDDKCKLTQSVAIMRYIADKHGMLGTTPEERARISMIEGAAMDLRIGFGRVCY  110
1glpa.pdb              49  YGQLPKFEDGDLTLYQSNAILRHLGRSLGLYGKNQREAAQMDMVNDGVEDLRGKYVTLIY  108
1gsua.pdb              56  FPNLPYLIDGDVKLTQSNAILRYIARKHNMCGETEVEKQRVDVLENHLMDLRMAFARLCY  115
1gta.pdb               52  FPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAY  111
1gtua.pdb              56  FPNLPYLIDGAHKITQSNAILCYIARKHNLCGETEEEKIRVDILENQTMDNHMQLGMICY  115
1guha.pdb              51  FQQVPMVEIDGMKLVQTRAILNYIASKYNLYGKDIKERALIDMYIEGIADLGEMILLLPV  110
1guka.pdb              48  FGQVPLVEIDGMMLTQTRAILSYLAAKYNLYGKDLKERVRIDMYADGTQDLMMMIAVAPF  107
1gula.pdb              49  FQQVPMVEIDGMKLVQTRSILHYIADKHNLFGKNLKERTLIDMYVEGTLDLLELLIMHPF  108
1hna.pdb               56  FPNLPYLIDGTHKITQSNAILRYIARKHNLCGESEKEQIREDILENQFMDSRMQLAKLCY  115
2fhea.pdb              51  LPNLPYYIDDKCKLTQSLAILRYIADKHGMIGTTSEERARVSMIEGAAVDLRQGISRISY  110
2gsra.pdb              47  FRQLPKFQDGDLTLYQSNAILRHLGRSFGLYGKDQKEAALVDMVNDGVEDLRCKYATLIY  106
3gtub.pdb              60  FPNLPYLLDGKNKITQSNAILRYIARKHNMCGETEEEKIRVDIIENQVMDFRTQLIRLCY  119
5gsta.pdb              56  FPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEEERIRADIVENQVMDNRMQLIMLCY  115
                               P          Q   I           G    E            D          

17gsa.pdb             110  TN-YEAGKDDYVKA--------LPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLL  160
1fhe.pdb              111  NPKFEEVKEEYVKE--------LPKTLKMWSDFLG---D-RHYLTGSSVSHVDFMLYETL  158
1glpa.pdb             109  TN-YENGKNDYVKA--------LPGHLKPFETLLSQNQGGKAFIVGDQISFADYNLLDLL  159
1gsua.pdb             116  SPDFEKLKPAYLEQ--------LPGKLRQLSRFLG---S-RSWFVGDKLTFVDFLAYDVL  163
1gta.pdb              112  SKDFETLKVDFLSK--------LPEMLKMFEDRLC---H-KTYLNGDHVTHPDFMLYDAL  159
1gtua.pdb             116  NPEFEKLKPKYLEE--------LPEKLKLYSEFLG---K-RPWFAGNKITFVDFLVYDVL  163
1guha.pdb             111  CP-----PEEKDAKLALIKEKIKNRYFPAFEKVLKSH-G-QDYLVGNKLSRADIHLVELL  163
1guka.pdb             108  KT-----PKEKEESYDLILSRAKTRYFPVFEKILKDH-G-EAFLVGNQLSWADIQLLEAI  160
1gula.pdb             109  LK-----PDDQQKEVVNMAQKAIIRYFPVFEKILRGH-G-QSFLVGNQLSLADVILLQTI  161
1hna.pdb              116  DPDFEKLKPEYLQA--------LPEMLKLYSQFLG---K-QPWFLGDKITFVDFIAYDVL  163
2fhea.pdb             111  QPKFEQLKEGYLKD--------LPTTMKMWSDFLG---K-NPYLRGTSVSHVDFMVYEAL  158
2gsra.pdb             107  TN-YEAGKEKYVKE--------LPEHLKPFETLLSQNQGGQAFVVGSQISFADYNLLDLL  157
3gtub.pdb             120  SSDHEKLKPQYLEE--------LPGQLKQFSMFLG---K-FSWFAGEKLTFVDFLTYDIL  167
5gsta.pdb             116  NPDFEKQKPEFLKT--------IPEKMKLYSEFLG---K-RPWFAGDKVTYVDFLAYDIL  163
                                                            L           G      D       

17gsa.pdb             161  LIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVNLPINGN-------------  207
1fhe.pdb              159  DSIRYLAPHCLDEFPKLKEFKSRIEALPKIKAYMESKRFIKWPLNGW-------------  205
1glpa.pdb             160  LIHQVLAPGCLDNFPLLSAYVARLSARPKIKAFLSSPEHVNRPINGN-------------  206
1gsua.pdb             164  DQQRMFVPDCPELQGNLSQFLQRFEALEKISAYMRSGRFMKAPIFWY-------------  210
1gta.pdb              160  DVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGW-------------  206
1gtua.pdb             164  DLHRIFEPKCLDAFPNLKDFISRFEGLEKISAYMKSSRFLPRPVFSK-------------  210
1guha.pdb             164  YYVEELDSSLISSFPLLKALKTRISNLPTVKKFLQP-GS-PRKPPMDEKSLEEARKIFRF  221
1guka.pdb             161  LMVEELSAPVLSDFPLLQAFKTRISNIPTIKKFLQP-GS-QRKPPPDGPYVEVVRIV---  215
1gula.pdb             162  LALEEKIPNILSAFPFLQEYTVKLSNIPTIKRFLEP-GS-KKKPPPDEIYVRTVYNIF--  217
1hna.pdb              164  ERNQVFEPSCLDAFPNLKDFISRFEGLEKISAYMKSSRFLPRPVFTK-------------  210
2fhea.pdb             159  DAIRYLEPHCLDHFPNLQQFMSRIEALPSIKAYMESNRFIKWPLNGW-------------  205
2gsra.pdb             158  RIHQVLNPSCLDAFPLLSAYVARLSARPKIKAFLASPEHVNRPINGN-------------  204
3gtub.pdb             168  DQNRIFDPKCLDEFPNLKAFMCRFEALEKIAAYLQSDQFCKMPINNK-------------  214
5gsta.pdb             164  DQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSRYLSTPIFSK-------------  210
                                        fp L     r                                     

17gsa.pdb             208  GKQ----------  210
1fhe.pdb              206  AA-SFGAGDA---  214
1glpa.pdb             207  GKQ----------  209
1gsua.pdb             211  TA-LWNNK-----  217
1gta.pdb              207  QA-TFGGGDHPPK  218
1gtua.pdb             211  MA-VWGNK-----  217
1guha.pdb                  -------------     
1guka.pdb                  -------------     
1gula.pdb                  -------------     
1hna.pdb              211  MA-VFGNK-----  217
2fhea.pdb             206  HA-QFGGGDAPP-  216
2gsra.pdb             205  GKQ----------  207
3gtub.pdb             215  MA-QWGNKPVC--  224
5gsta.pdb             211  LA-QWSNK-----  217
                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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