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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:14:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/gln-synt.html
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#====================================
# Aligned_structures: 2
#   1: 1f52a.pdb
#   2: 1htqa.pdb
#
# Length:        379
# Identity:      179/379 ( 47.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    179/379 ( 47.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           16/379 (  4.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f52a.pdb               1  DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNS   60
1htqa.pdb               1  SRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNT   60
                            RDPR IA  AE YL  TGIADT  FG E EF  FD   F     GS    D I G WN 

1f52a.pdb              61  STKY---EGGNKGHRP-GVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVE---AHHHEV  113
1htqa.pdb              61  GAATEADGSPNRGYKVRHKGG-YFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGS-  118
                                     N G       G YFPV P D   D R  M       G   E         

1f52a.pdb             114  ATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMS  173
1htqa.pdb             119  --GGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQS  176
                              GQ E    FN     AD  Q YKY   N A   GKT TFMPKP FGDNGSGMHCH S

1f52a.pdb             174  LAKNGTNLFSGDKYAG-LSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVML  232
1htqa.pdb             177  LWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINL  236
                           L K G  L         LS  A  YIGG   HA    A  NPT NSYKRLVPGYEAP  L

1f52a.pdb             233  AYSARNRSASIRIPVVA-SPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEP  291
1htqa.pdb             237  VYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAP  296
                            YS RNRSA  RIP     PKA R E R PD   NPYL F A LMAGLDGIKNKI P  P

1f52a.pdb             292  MDKNLYDLPP-EEAKEIPQVAGSLEEALNALDLDREFLKAGGVFTDEAIDAYIALRREED  350
1htqa.pdb             297  VDKDLY-ELPPEEAASIPQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENE  355
                            DK LY   P EEA  IPQ    L      L  D E L  GGVFT   I   I   RE  

1f52a.pdb             351  DRVRMTPHP-VEFELYYSV  368
1htqa.pdb             356  IEPVNIRPHPYEFALYYDV  374
                                      EF LYY V


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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