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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 14:21:31 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf5.html
################################################################################################
#====================================
# Aligned_structures: 6
#   1: 1a3h.pdb
#   2: 1bqca.pdb
#   3: 1ceo.pdb
#   4: 1ecea.pdb
#   5: 1edg.pdb
#   6: 1egza.pdb
#
# Length:        556
# Identity:        9/556 (  1.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     13/556 (  2.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          337/556 ( 60.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a3h.pdb                1  ----------SVVEEHGQLSISNGELVNER--------GEQVQLKGMSSHGL--------   34
1bqca.pdb               1  --------AT-------GLHVKNGRLYEAN--------GQEFIIRGVSHP-H--------   28
1ceo.pdb                1  MV---------------------------S------------FKAGINLGGWISQYQ--V   19
1ecea.pdb               1  ------AG-------GGYWHTSGREILDAN--------NVPVRIAGINWFGFET--CNY-   36
1edg.pdb                1  --MYDA---S----LIPNLQI--PQKNIPNNDGMNFVK--G-LRLGWNLGNTFDA-F--N   43
1egza.pdb               1  --------------SVEPLSVNGNKIYAGE---------KAKSFAGNSLFWS-------N   30
                                                                        G              

1a3h.pdb               35  ---------QWYG---QFV-NYESMKWLRDDWGINVFRAAMYT--S-SG-----------   67
1bqca.pdb              29  ---------NWYP---Q---HTQAFADIKS-HGANTVRVVLSN--GVRW-----------   59
1ceo.pdb               20  F-----S--KE-HF-DTFI-TEKDIETIAE-AGFDHVRLPFDYPII-E-SD---------   57
1ecea.pdb              37  -V-------VHGL---WSRDYRSMLDQIK-SLGYNTIRLPYSDDIL-KPG-TMPNSINFY   82
1edg.pdb               44  GTNITNELDYETSWSGIKT-TKQMIDAIKQ-KGFNTVRIPVSWHPH-V-SG---------   90
1egza.pdb              31  NG-------WGGE---KFY-TADTVASLKKDWKSSIVRAAMGV--Q-ES-----------   65
                                                           g    R                      

1a3h.pdb               68  ---------GY--ID-DPSVKEKVKEAVEAAIDLDIYVIIDWHIL-S--------D----  102
1bqca.pdb              60  ---------SKN-------GPSDVANVISLCKQNRLICMLEVHD----------------   87
1ceo.pdb               58  ----DNV--GE---Y-KEDGLSYIDRCLEWCKKYNLGLVLDMHHA-P-------G-----   94
1ecea.pdb              83  QMNQDLQ---GL------TSLQVMDKIVAYAGQIGLRIILDRHRP-D--------CSGQS  124
1edg.pdb               91  -------SDYK---I-SDVWMNRVQEVVNYCIDNKMYVILNTHHDVDKVKGYFPS-----  134
1egza.pdb              66  ---------GG-YLQDPAGNKAKVERVVDAAIANDMYAIIGWHS----------------   99
                                                                     H                 

1a3h.pdb              103  N-DPNI-------YKEEAKDFFDEMSELYGDY-PNVI-YEIANEPN-GS-----------  140
1bqca.pdb              88  TTGYGE--QSGASTLDQAVDYWIELKSVLQGEEDYVL-INIGNEPYGND-----------  133
1ceo.pdb               95  S-TLFE--DPN--QQKRFVDIWRFLAKRYINEREHIA-FELLNQVV-EP-----------  136
1ecea.pdb             125  A-LWYT-S---SVSEATWISDLQALAQRYKGN-PTVVGFDLHNEPH-DP-----------  166
1edg.pdb              135  S----QY-MAS--SKKYITSVWAQIAARFANYDEHLI-FEGMNEPR-L-VGHANEWWPEL  184
1egza.pdb             100  H-SAEN-------NRSEAIRFFQEMARKYGNK-PNVI-YEIYNEPL-Q------------  136
                                                                     Nep               

1a3h.pdb              141  ------DVTWG------NQIKPYAEEVIPIIRNN---DPNNIIIVGTG---------TWS  176
1bqca.pdb             134  S-----ATV--------AAWATDTSAAIQRLRAA---GFEHTLVVDAP---------NWG  168
1ceo.pdb              137  ------D---S------TRWNKLMLECIKAIREI---DSTMWLYIGGN---------NYN  169
1ecea.pdb             167  -------ACWGCGDPSIDWRL-AAERAGNAVLSV---NPNLLIFVEGVQSYNGDSYWWG-  214
1edg.pdb              185  TNSDVVDS--I------NCINQLNQDFVNTVRATGGKNASRYLMCPGY----------VA  226
1egza.pdb             137  -------VSWS------NTIKPYAEAVISAIRAI---DPDNLIIVGTP---------SWS  171
                                                          r                            

1a3h.pdb              177  QD--VHHAAD-NQ--L-A-D--------P-NVMYAFHFYAG--T----------------  202
1bqca.pdb             169  QDWT-NTMRN-NADQVYASD------PTG-NTVFSIHMYGV-YS----------------  202
1ceo.pdb              170  S---PDELKN-L---A-D-ID------DD-YIVYNFHFYNP--FFFTHQKAHWSESAMAY  211
1ecea.pdb             215  GN--LQGAGQ-YP--V-V-LN----V--PNRLVYSAHDYATS-V----------------  244
1edg.pdb              227  S---PDGATNDYF--R-M-PNDISGN-NN-KIIVSVHAYCP--WNFAGLA-MA-----DG  269
1egza.pdb             172  QN--VDEASR-DP--I-N-A--------K-NIAYTLHFYAG--T----------------  197
                                                               H Y                     

1a3h.pdb              203  -------------------------------------------H----------GQNLR-  208
1bqca.pdb             203  -------------------------------------------Q----------ASTIT-  208
1ceo.pdb              212  NRTVKYPGQYEGIEEFVKNNPKYSFMMELNNLKL--NKE----L----------LRKDL-  254
1ecea.pdb             245  -------------------------------------------YPQTWFSDPTFPNNMPG  261
1edg.pdb              270  -GTNAWN---------------------------IND-SKDQSE----------VTWFM-  289
1egza.pdb             198  -------------------------------------------H----------GESLR-  203
                                                                                       

1a3h.pdb              209  ---DQVDY-AL-D-QGAAIFVSEWGT-S-AATGDG--GVFLDEAQVWIDFMD------ER  252
1bqca.pdb             209  ---SYLEH-FV-N-AGLPLIIGEFGH-DHSD---G--NP---DEDTIMAEAE------RL  247
1ceo.pdb              255  ---KPAIEFRE-K-KKCKLYCGEFGVIA-----IADLESRIKWHEDYISLLE------EY  298
1ecea.pdb             262  IWNKNWGY-LFNQNI-APVWLGEFGTTL-----QS--TTDQTWLKTLVQYLRPTAQYG-A  311
1edg.pdb              290  ---DNIYNKYT-S-RGIPVIIGECGAVD-----KNNLKTRVEYMSYYVAQAK------AR  333
1egza.pdb             204  ---NKARQ-AL-N-NGIALFVTEWGT-V-NADGNG--GVNQTETDAWVTFMR------DN  247
                                                 E G                                   

1a3h.pdb              253  -NLSWANWS---LT-HK-D---ES-SAALM-PG-ANPTGGWTEA-EL--SPSGTFVR-E-  295
1bqca.pdb             248  -KLGYIGWS---WS-GN-GGGVEY-LDMVYNFD-G---------DNL--SPWGERIFYGP  288
1ceo.pdb              299  -DIGGAVWN---YK-KM-D------FEIYN-ED-R---------K-PVSQELVNILA-R-  332
1ecea.pdb             312  DSFQWTFWS---WN-PD-S---GDTGGILK-DD-W---------QTV-DTVKDGYLA-P-  349
1edg.pdb              334  -GILCILWDNNNFSGTGEL------FGFFD-RRSC---------Q-FKFPEIIDGMV-K-  373
1egza.pdb             248  -NISNANWA---LN-DK-N---EG-ASTYY-PD-S---------KNL--TESGKKVK-S-  282
                                  W                                                    

1a3h.pdb              296  -KIRE-S---------  300
1bqca.pdb             289  NGIAS-TAKEA-VIFG  302
1ceo.pdb                   ----------------     
1ecea.pdb             350  -IK-SS-IFDP-V---  358
1edg.pdb              374  -YAFG----LIN----  380
1egza.pdb             283  -IIQS-WPYKA-----  291
                                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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