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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:12:42 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf46.html
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#====================================
# Aligned_structures: 2
#   1: 1chka.pdb
#   2: 1qgia.pdb
#
# Length:        292
# Identity:       45/292 ( 15.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     45/292 ( 15.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           87/292 ( 29.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1chka.pdb               1  AGAGL--------------------DDPHKKEIAMELVSSAENSSLDWKAQYKYIEDIGD   40
1qgia.pdb               1  -----ASPDDNFSPETLQFLRNNTGLDGEQWNNIMKLINKPEQDDLNWIKYYGYCEDIED   55
                                                     D       M L    E   L W   Y Y EDI D

1chka.pdb              41  GRGYTGGIIGFCSG------TGDMLELVQHYTDLEP--GNILAKYLPALKK-----VNGS   87
1qgia.pdb              56  ERGYTIGLFGATTGGSRDTHP-DGPDLFKAYDAAKGASNPSADGALKRLG-INGKMKGSI  113
                            RGYT G  G   G        D   L   Y              L  L           

1chka.pdb              88  ASHS-GLGTPFTKDWATAAKDTVFQQAQNDERDRVYFDPAVSQAKADGLR-ALGQFAYYD  145
1qgia.pdb             114  LEI-KDSEKVFCGKIKKLQNDAAWRKAMWETFYNVYIRYSVEQARQRGFTSAVTIGSFVD  172
                                     F         D     A       VY    V QA   G   A       D

1chka.pdb             146  AIVMHGPGNDPTSFGGIRKTAMKKARTPAQG--GDETTYLNGFLDARKAAMLTEAAHDDT  203
1qgia.pdb             173  TALNQGATGGSDTLQGLLARSG---------SSSNEKTFMKNFHAKRTLVVDT-NKY---  219
                                G         G                   E T    F   R     T       

1chka.pdb             204  SRV---------DTEQRVFLKAGNLDLNPP-------LKWKTYGDPYVINS-  238
1qgia.pdb             220  ---NKPPNGKNRVKQWDTLVDMGKMNLKNVDSEIAQVTDWEM---------K  259
                                                 G   L            W            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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