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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 22:25:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/ghf22.html
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#====================================
# Aligned_structures: 12
#   1: 1alc.pdb
#   2: 1ghla.pdb
#   3: 1hfx.pdb
#   4: 1hfya.pdb
#   5: 1hhl.pdb
#   6: 1hml.pdb
#   7: 1jug.pdb
#   8: 1lmn.pdb
#   9: 1lz1.pdb
#  10: 1lz3.pdb
#  11: 1lzt.pdb
#  12: 2eql.pdb
#
# Length:        136
# Identity:       17/136 ( 12.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     30/136 ( 22.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           17/136 ( 12.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1alc.pdb                1  -KQFTKCELSQNLY--DIDGYGRIALPELICTMFHTSGYDTQAIVEN-D--ESTEYGLFQ   54
1ghla.pdb               1  GKVYGRCELAAAMKRMGLDNYRGYSLGNWVCAAKFESNFNTGATNRN-T-DGSTDYGILQ   58
1hfx.pdb                1  -KQLTKCALSHELN--DLAGYRDITLPEWLCIIFHISGYDTQAIVKN-S--DHKEYGLFQ   54
1hfya.pdb               1  -EQLTKCEVFQKLK--DLKDYGGVSLPEWVCTAFHTSGYDTQAIVQN-N--DSTEYGLFQ   54
1hhl.pdb                1  -KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNSQATNRN-T-DGSTDYGVLQ   57
1hml.pdb                1  -KQFTKCELSQLLK--DIDGYGGIALPELICTMFHTSGYDTQAIVEN-N--ESTEYGLFQ   54
1jug.pdb                1  -KILKKQELCKNLVAQGMNGYQHITLPNWVCTAFHESSYNTRATNHN-T-DGSTDYGILQ   57
1lmn.pdb                1  -KVYDRCELARALKASGMDGYAGNSLPNWVCLSKWESSYNTQATNRN-T-DGSTDYGIFQ   57
1lz1.pdb                1  -KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAG-DRSTDYGIFQ   58
1lz3.pdb                1  -KVYGRCELAAAMKRLGLDNYRGYSLGNWVCAAKFESNFDTHATNRN-T-DGSTDYGILQ   57
1lzt.pdb                1  -KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRN-T-DGSTDYGILQ   57
2eql.pdb                1  -KVFSKCELAHKLKAQEMDGFGGYSLANWVCMAEYESNFNTRAFNGK-NANGSSDYGLFQ   58
                            k    cel           y    L    C     S   t A   n     s  YG  Q

1alc.pdb               55  ISNALWCKSSQSPQSRNICDITCDKFLDDDITDDIMCAKKILDIK-GIDYWIAHKALCT-  112
1ghla.pdb              59  INSRWWCNDGRTPGSKNLCHIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRKHCKG  118
1hfx.pdb               55  INDKDFCESSTTVQSRNICDISCDKLLDDDLTDDIMCVKKILDIK-GIDYWLAHKPLCS-  112
1hfya.pdb              55  INNKIWCKDDQNPHSRNICNISCDKFLDDDLTDDIVCAKKILDKV-GINYWLAHKALCS-  112
1hhl.pdb               58  INSRWWCNDGRTPGSRNLCNIPCSALQSSDITATANCAKKIVSDGDGMNAWVAWRKHCKG  117
1hml.pdb               55  ISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIK-GIDYWLAHKALCT-  112
1jug.pdb               58  INSRYWCHDGKTPGSKNACNISCSKLLDDDITDDLKCAKKIAGEAKGLTPWVAWKSKCRG  117
1lmn.pdb               58  INSRYWCDDGRTPGAKNVCGIRCSQLLTDDLTVAIRCAKRVVLDPNGIGAWVAWRLHCQN  117
1lz1.pdb               59  INSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQN  118
1lz3.pdb               58  INSRWWCNDGRTPGSKNLCNIPCSALLSSDITASVNCAKKIASGGDGMNAWVAWRNRCKG  117
1lzt.pdb               58  INSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKG  117
2eql.pdb               59  LNNKWWCKDN-KRSSSNACNIMCSKLLDENIDDDISCAKRVVRDPKGMSAWKAWVKHCKD  117
                           i    wC         N C i C   l         CaK       G   W A    C  

1alc.pdb              113  EKLEQWLC----EK--  122
1ghla.pdb             119  TDVNVWIRGCRL----  130
1hfx.pdb              113  DKLEQWYC----EAQ-  123
1hfya.pdb             113  EKLDQWLC--------  120
1hhl.pdb              118  TDVRVWIKGCRL----  129
1hml.pdb              113  EKLEQWLC----EK-L  123
1jug.pdb              118  HDLSKFKC--------  125
1lmn.pdb              118  QDLRSYVAGCGV----  129
1lz1.pdb              119  RDVRQYVQGCGV----  130
1lz3.pdb              118  TDVHAWIRGCRL----  129
1lzt.pdb              118  TDVQAWIRGCRL----  129
2eql.pdb              118  KDLSEYLASCNL----  129
                                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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