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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:13:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf18.html
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#====================================
# Aligned_structures: 5
#   1: 1cnv.pdb
#   2: 1edt.pdb
#   3: 1nar.pdb
#   4: 2ebn.pdb
#   5: 2hvm.pdb
#
# Length:        404
# Identity:        6/404 (  1.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     24/404 (  5.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          216/404 ( 53.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cnv.pdb                1  DI---SSTEIAVYWG-QR-------EDGLLRDTCKT-------NNYKIVFISFLDKFGC-   41
1edt.pdb                1  ----KQGPTSVAYVEV---------NNNSMLNVGKYTLADGGGNAFDVAVIFAANI-NYD   46
1nar.pdb                1  -----PKPIFREYIGVKPNSTTLHD--FPTEIIN--TE-TLE----FHYILGFAIE-SYY   45
2ebn.pdb                1  --TTKANIKLFSFTEV---------NDTNPLNNLNFTLKNSGKPLVDMVVLFSANI-NYD   48
2hvm.pdb                1  -------GGIAIYWGQNG-------NEGTLTQTCST-------RKYSYVNIAFLNKFGN-   38
                                       y                                               

1cnv.pdb               42  --EIRK--PELELE--GVCGPSVGNPCS-----FLESQIKECQR-MG-VKVFLALG-GPK   87
1edt.pdb               47  TGTKTA--YLHFNE--NV----------QRVLDNAVTQIRPLQQ-QG-IKVLLSVLGNHQ   90
1nar.pdb               46  E-SGKGTGTFEESWDVEL----------F-----GPEKVKNLKRRHPEVKVVISIG-GRG   88
2ebn.pdb               49  AANDKV--FVSNNP--NV----------QHLLTNRAKYLKPLQD-KG-IKVILSILGNHD   92
2hvm.pdb               39  --GQ-T--PQINLA--GHCNPAAG-GCT-----IVSNGIRSCQI-QG-IKVMLSLG-GGI   82
                                                                     q   g  KV ls      

1cnv.pdb               88  GT--Y----SA-CSADYAKDLAEYLHTYFLSERRE-----GPLGKVA------LDGIHFD  129
1edt.pdb               91  GAG----FANF-PSQQAASAFAKQLSDAVA--------------KYG------LDGVDFD  125
1nar.pdb               89  VNTPFDP---AE-ENVWVSNAKESLKLIIQ--------------KYSDDSGNLIDGIDIH  130
2ebn.pdb               93  RSG----IANL--STARAKAFAQELKNTCD--------------LYN------LDGVFFD  126
2hvm.pdb               83  GS--Y----TL-ASQADAKNVADYLWNNFLG----GKSSSRPLGDAV------LDGIDFD  125
                                        s   a   a  L                            lDG  fd

1cnv.pdb              130  IQKP---------------VDELNWDNLLEELYQIKDVYQST---FLLSAAPGCLSPDEY  171
1edt.pdb              126  DEYAEY---G---NNGTAQPNDSSFVHLVTALRANMP----D---KIISLY-N----IGP  167
1nar.pdb              131  YEHIRSDEP-----------FATLMGQLITELKKDD-----DLNINVVSIAPSENN-SSH  173
2ebn.pdb              127  DEYSAY---QTPPPSGFVTPSNNAAARLAYETKQAMP----N---KLVTVY-V----YSR  171
2hvm.pdb              126  IEHG----------------STLYWDDLARYLSAYSK-QGKK---VYLTAAPQCPFPDRY  165
                            e                         L   l                            

1cnv.pdb              172  LDN-AIQ---------TRHFDYIFVRFYNDRSCQYSTGNIQRIRNAWLSWTKSVYPRDKN  221
1edt.pdb              168  AASRL--S--YGGVDVSDKFDYAWNPY-Y---GTWQ-----VP-G-I-----ALP--KAQ  205
1nar.pdb              174  YQK-LYN-------AKKDYINWVDYQFSNQQ-KPVS--TDDAFVEIFKSLEKDYH--PHK  220
2ebn.pdb              172  TSS-F--PTAVDGVNAGSYVDYAIHD--Y---GGSY-----DLATNYP----GLA--KSG  212
2hvm.pdb              166  LGT-ALN---------TGLFDYVWVQFYNNPPCQYSSGNINNIINSWNRWTTSINA-G-K  213
                                               dy                                      

1cnv.pdb              222  LFL-ELPASQATAPGGGYIPPSAL-IGQ---VLPYL-PDLQ---TRYAGIALWNRQADKE  272
1edt.pdb              206  LSPAAVEIGR-T------------SRST---VADLARR--TVDE-GYGVYLTYNLD----  242
1nar.pdb              221  VLP-GFSTDPLDTKHNK------ITRDI---FIGGCTR--LVQTFSLPGVFFWNANDSVI  268
2ebn.pdb              213  MVMSSQEFNQ-G----------------RYATAQALRN--IVTK-GYGGHMIFAMD----  248
2hvm.pdb              214  IFL-GLPAAPEAAGS-GYVPPDVL-ISR---ILPEIKK--S---PKYGGVMLWSKFYDDK  262
                                                                         y g           

1cnv.pdb              273  T-----------------GYSTNIIRYL----------------  283
1edt.pdb              243  ----GG--------D-RTADVSAFTRELYGSEAVRT--------  265
1nar.pdb              269  PKRD-GDK------P--FIVELTLQQLLAA--------------  289
2ebn.pdb              249  ----P---NRSNFTSGQLPALKLIAKELYGDELVYSNTPYSKDW  285
2hvm.pdb              263  N-----------------GYSSSILDSV----------------  273
                                                      l                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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