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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:03:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/gdh.html
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#====================================
# Aligned_structures: 2
#   1: 1gdha.pdb
#   2: 2naca.pdb
#
# Length:        388
# Identity:       77/388 ( 19.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     77/388 ( 19.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           82/388 ( 21.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gdha.pdb               1  KKKILI--TWP----------------------------------------LPEA----A   14
2naca.pdb               1  -AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGL   59
                             K L                                                       

1gdha.pdb              15  MARARESYDVIAHGDDPKITI-----DEMIETAKSVDALLIT---LNEKCRKEVIDRIPE   66
2naca.pdb              60  RKYLESNGHTLVVTS-D----KDGPDSVFERELVDADVVISQPFWP-AYLTPERIAKAKN  113
                                                               D               E I     

1gdha.pdb              67  NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMI  126
2naca.pdb             114  -LKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWA  172
                             K   T  IG DH DL     R   V           AE      L   R         

1gdha.pdb             127  RTRSWPGWEPLEL--VGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSD  184
2naca.pdb             173  RKGGW---NIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESV  229
                           R   W              L     G    G IG A   R   FD    Y D HR   S 

1gdha.pdb             185  EASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVD  244
2naca.pdb             230  EKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD  289
                           E     T H        V     LN P  PET    N  T K    GA  VNTARG L D

1gdha.pdb             245  NELVVAALEAGRLAYAGFDVFAGEPN--INEGYYDLPNTFLFPHIGSAATQAREDMAHQA  302
2naca.pdb             290  RDAVARALESGRLAGYAGDVWFPQPAPKD-HPWRTMPYNGMTPHISGTTLTAQARYAAGT  348
                              V  ALE GRLA    DV    P           P     PHI      A    A   

1gdha.pdb             303  NDLIDALFGGADMSY-ALA---------  320
2naca.pdb             349  REILECFFEGRPIRDEY--LIVQGGALA  374
                                  F G                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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