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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:03:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/gag_p17.html
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#====================================
# Aligned_structures: 2
#   1: 1ed1a.pdb
#   2: 1hiwa.pdb
#
# Length:        123
# Identity:       55/123 ( 44.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     55/123 ( 44.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           17/123 ( 13.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ed1a.pdb               1  SVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLA   60
1hiwa.pdb               1  -VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQ   59
                            VLSG   D  EKIRLRPGGKK Y LKH VWA  EL RF     LLE  EGC  IL  L 

1ed1a.pdb              61  PLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTAETMP------  114
1hiwa.pdb              60  PSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSK-------KKAQQA  112
                           P   TGSE L SLYNT  V  C H    VK T EA                         

1ed1a.pdb                  ---     
1hiwa.pdb             113  AAD  115
                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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