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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:54:11 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/fkbp.html
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#====================================
# Aligned_structures: 4
#   1: 1fkb.pdb
#   2: 1pbk.pdb
#   3: 1rot.pdb
#   4: 1yat.pdb
#
# Length:        128
# Identity:       28/128 ( 21.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     61/128 ( 47.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           23/128 ( 18.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fkb.pdb                1  ----------GVQVETISPGD-GRTFPKRGQTCVVHYTGMLEDGKKFDSSRD--------   41
1pbk.pdb                1  -------P--KYTKSVLKKGD-KTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKN   50
1rot.pdb                1  GVDISPKQDEGVLKVIKREGTG-TETPMIGDRVFVHYTGWLLDGTKFDSSLD--------   51
1yat.pdb                1  -SEVIE-G--NVKIDRISPGD-GATFPKTGDLVTIHYTGTLENGQKFDSSVD--------   47
                                      v       Gd    fPk Gd v  hYTG L dG kFDss d        

1fkb.pdb               42  RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP-GIIPPHATLVFD  100
1pbk.pdb               51  -AKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFE  109
1rot.pdb               52  RKDKFSFDLGKGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSP-PKIPPNATLVFE  110
1yat.pdb               48  RGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP-GLIPPNSTLVFD  106
                              pf f  G g VI gWd     msvGe arlti p yAYG  G P   IPPnatLvF 

1fkb.pdb              101  VELLKLE-  107
1pbk.pdb              110  VELVDID-  116
1rot.pdb              111  VELFEFKG  118
1yat.pdb              107  VELLKVN-  113
                           VEL     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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