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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 19:32:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/fer4.html
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#====================================
# Aligned_structures: 8
#   1: 1clf.pdb
#   2: 1fdn.pdb
#   3: 1fdx.pdb
#   4: 1fxd.pdb
#   5: 1fxra.pdb
#   6: 1rof.pdb
#   7: 2fxb.pdb
#   8: 5fd1.pdb
#
# Length:        168
# Identity:        3/168 (  1.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      4/168 (  2.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          152/168 ( 90.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1clf.pdb                1  AYKIADSC--VSCGACASECPVNAISQGDS----IFVIDADTCIDCGNCAN-VC--P---   48
1fdn.pdb                1  ----------------------------------AYV-INEACISCGACEP-ECPV----   20
1fdx.pdb                1  AYVINDSC--IACGACKPECPVNIIQG--S----IYAIDADSCIDCGSCAS-VC--P---   46
1fxd.pdb                1  ----------------------------------PIE-VNDDCMACEACVE-IC------   18
1fxra.pdb               1  --------------------------------ARKFYVDQDECIACESCVE-IA------   21
1rof.pdb                1  ------------------------------MK---VRVDADACIGCGVCEN-LC------   20
2fxb.pdb                1  --------------------------------PKYTIVDKETCIACGACGA-AA------   21
5fd1.pdb                1  AFVVTDNCIKCKYTDCVEVCPVDCFYE--G--PNFLVIHPDECIDCALCEPE-C--PAQA   53
                                                                     Ci C  C           

1clf.pdb                   ------------------------------------------------------------     
1fdn.pdb               21  ------------------------------NAISSG--DDR-YVIDAD----TCI-----   38
1fdx.pdb                   ------------------------------------------------------------     
1fxd.pdb               19  -----------------------------PDVFEMNE-EGDKAVVIN-PDS---------   38
1fxra.pdb              22  -----------------------------PGAFAMDPEIEK-AYVKD-VEGA--------   42
1rof.pdb               21  -----------------------------PDVFQLGD-DGK-AKVLQ-PET---------   39
2fxb.pdb               22  -----------------------------PDIYDYDE-DGI-AYVTL-----DD-NQGIV   44
5fd1.pdb               54  IFSEDEVPEDMQEFIQLNAELAEVWPNIT------------E---------------KKD   86
                                                                                       

1clf.pdb               49  --------------------------VGAPVQE---------------   55
1fdn.pdb               39  ----DC------------GACAGVCPVDAPVQA---------------   55
1fdx.pdb               47  --------------------------VGAPNPED--------------   54
1fxd.pdb               39  -------------DLDCVEEAIDSCPAEAIVRS---------------   58
1fxra.pdb              43  -------S------QEEVEEAMDTCPVQCIHWE-DE------------   64
1rof.pdb               40  -------------DLPCAKDAADSCPTGAISVE-E-------------   60
2fxb.pdb               45  E---V-PDI----LIDDMMDAFEGCPTDSIKVA-DEPFDGDPNKFE--   81
5fd1.pdb               87  PLPD--AEDWDGV--------------------------KGKLQHLER  106
                                                                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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