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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:41:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/eIF-5a.html
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#====================================
# Aligned_structures: 2
#   1: 1bkb.pdb
#   2: 2eifa.pdb
#
# Length:        143
# Identity:       58/143 ( 40.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     58/143 ( 40.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           21/143 ( 14.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bkb.pdb                1  KWV------STKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDG   54
2eifa.pdb               1  ---AAAAAPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEK   57
                                     TK V  G LK G YV IDG PC  V I  SK GKHG AKAR V  G F  

1bkb.pdb               55  GKRTLSLPVDAQVEVPIIEKFTAQILSVSGDVIQL-D-RDYKTIEVPKYVEEE---AKGR  109
2eifa.pdb              58  VKKEFVAPTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYETLELP------IPEGIEG  111
                            K     P    VEVPII     Q L   GD  Q  D   Y T E P             

1bkb.pdb              110  LAPGAEVEVWQILDRYKIIRVKG  132
2eifa.pdb             112  LEPGGEVEYIEAVGQYKITRVI-  133
                           L PG EVE       YKI RV  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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