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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 13:38:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cyclo.html
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#====================================
# Aligned_structures: 6
#   1: 1a58.pdb
#   2: 1clh.pdb
#   3: 1cyna.pdb
#   4: 1lopa.pdb
#   5: 2cyha.pdb
#   6: 2rmca.pdb
#
# Length:        211
# Identity:       29/211 ( 13.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     42/211 ( 19.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           64/211 ( 30.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a58.pdb                1  MSK-----KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGK   55
1clh.pdb                1  ---A----KGDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNS----------   38
1cyna.pdb               1  ------GPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG-------   47
1lopa.pdb               1  ------------MVTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCRE----------   33
2cyha.pdb               1  ---------VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKG-------   44
2rmca.pdb               1  ----KRGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKG-------   49
                                        V           G     l     P t  NF                

1a58.pdb               56  PL-HYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEE-FVMKHD-EPFVVSMA  112
1clh.pdb               39  --GFYNNTTFHRVIPGFMIQGGGF-TEQMQQKKP--NPPIKNEA-DNGL-RNTRGTIAMA   91
1cyna.pdb              48  -F-GYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDEN-FKLKHY-GPGWVSMA  103
1lopa.pdb              34  --GFYNNTIFHRVINGFMIQGGGF-EPGMKQKAT--KEPIKNEANNGLK-N-TRGTLAMA   86
2cyha.pdb              45  -F-GYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDEN-FILKHT-GPGILSMA  100
2rmca.pdb              50  -Y-GYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDEN-FKLKHY-GIGWVSMA  105
                               Y    FHRvI  FMiQGG F                  E     k     g   MA

1a58.pdb              113  NK-GPNTNGSQFFITTTPAPHLNN---------IHVVFGKVVSGQEVVTKIEYLKTNS--  160
1clh.pdb               92  RTADKDSATSQFFINVADNAFLDHGQR----DFGYAVFGKVVKGMDVADKISQVPTHDVG  147
1cyna.pdb             104  NA-GKDTNGSQFFITTVKTAWLDG---------KHVVFGKVLEGMEVVRKVESTKTDS--  151
1lopa.pdb              87  RTQAPHSATAQFFINVVDNDFLNFSG-ESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSG  145
2cyha.pdb             101  NA-GPNTNGSQFFICTAKTEWLDG---------KHVVFGKVKEGMNIVEAMERF-GSR--  147
2rmca.pdb             106  NA-GPDTNGSQFFITLTKPTWLDG---------KHVVFGKVLDGMTVVHSIELQATDG--  153
                                    sQFFI       L              VFgkV  Gm  v       t    

1a58.pdb              161  --KNRPLADVVILNCGELV------------  177
1clh.pdb              148  PYQNVPSKPVVILSAKVLP------------  166
1cyna.pdb             152  --RDKPLKDVIIADCGKIEVEKPFAIAKE--  178
1lopa.pdb             146  MHQDVPKEDVIIESVTVSE------------  164
2cyha.pdb             148  --NGKTSKKITIADCGQ-LE-----------  164
2rmca.pdb             154  --HDRPLTDCTIVNSGKIDVKTPFVVEVPDW  182
                                p     I                   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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