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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 17:27:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/bv.html
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#====================================
# Aligned_structures: 7
#   1: 1bmv1.pdb
#   2: 1cwpa.pdb
#   3: 1smva.pdb
#   4: 1stma.pdb
#   5: 2stv.pdb
#   6: 2tbva.pdb
#   7: 4sbva.pdb
#
# Length:        347
# Identity:        0/347 (  0.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      0/347 (  0.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          271/347 ( 78.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bmv1.pdb               1  SIS----------Q---QTVWNQMA-TVRTPLNFDSSKQ---SFCQFSVDLLGGGISVDK   43
1cwpa.pdb               1  -------------------------KAIKA-W-------TGYSVSKWTASCA--------   19
1smva.pdb               1  -----------------GAITV-L--------------------HCELTAEI--------   14
1stma.pdb               1  -----------------AAATS-L--------------------VYDT-CYV--------   13
2stv.pdb                1  ---TMRAVKRMINT---HLEHK-R--------------------FALINSGN--------   25
2tbva.pdb               1  -----------------GVTVT-S--------------------HREYLTQV--------   14
4sbva.pdb               1  --------------SSMDVTIL-S--------------------HCELSTEL--------   17
                                                                                       

1bmv1.pdb              44  T---GDW-ITL------VQNSP---------ISNLL-------RV-AAWKKG-CLMVKVV   75
1cwpa.pdb              20  -AAEA-K-VTS------AITIS-----L---PNELS-------SERNKQLK-VGRVLLWL   54
1smva.pdb              15  -GVTD-SIVVS------SELVMPYT--VGTWLRGVA-------DN-WSKYS-WLSVRYTY   55
1stma.pdb              14  -TLTE-RATTS------FQR----Q--SFPTLKGMG--------D--RAFQ-VVAFTIQG   48
2stv.pdb               26  -TNA---TAGT------VQNLS----------NGIIQGDDINQRS-GDQVR-IVSHKLHV   63
2tbva.pdb              15  -NNSS-GFVVNGGIVGNSLQLNPSNGTLFSWLPALA-------SN-FDQYS-FNSVVLDY   63
4sbva.pdb              18  -AVTV-TIVVT------SELVMPFT--VGTWLRGVA-------QN-WSKYA-WVAIRYTY   58
                                                                                       

1bmv1.pdb              76  M-SGNAAVKRSDWASLVQVFLTNS-N------STEH---F-----------DA---CRWT  110
1cwpa.pdb              55  G-LLPS-VS-----GTVKSCVTET-Q-----TTAAASFQV-----------AL---AVAD   87
1smva.pdb              56  I-PSC----PSSTAGSIHMGFQYDMA-DTVPVSVN-KLSN-----------LR---GYVS   94
1stma.pdb              49  V-SA--------APLMYNARLYNP-G-DTD---------------------SVHATGVQL   76
2stv.pdb               64  RGTAI----TVSQTFRFIWFRDNMNRG-TTPTVL--EVLNTANFMSQYNPI---------  107
2tbva.pdb              64  V-PLC----GTTEVGRVALYFDKDSQ-DPEPADRV-ELAN-----------FG---VLKE  102
4sbva.pdb              59  L-PSC----PTTTSGAIHMGFQYDMA-DTLPVSVN-QLSN-----------LK---GYVT   97
                                                                                       

1bmv1.pdb             111  KSEP-----------------------HS-WELIF--PIEV---CGPN---NGFEMW---  135
1cwpa.pdb              88  N-SK-----------------------DV-VAAMY--PE--------AF--KGITLE---  107
1smva.pdb              95  G-Q-VWSGSAGLCFI---NNSRCSDTSTA-ISTTL--DV-----S--ELGKK-WYPY---  135
1stma.pdb              77  M-G-TVPR--------------------T-VRLTP--RV-----G--QN--N-WFFG---   98
2stv.pdb              108  ----------TLQQKRFT----------ILKDVTLNCSL--TGE-------S-IKDRIIN  137
2tbva.pdb             103  T-A-PWAE----------------------AMLRI--PT-----D----K-V-KRYC---  122
4sbva.pdb              98  G-P-VWEGQSGLCFV---NNTKCPDTSRA-ITIAL--DT-----N--EVSEK-RYPF---  138
                                                                                       

1bmv1.pdb             136  --------S--------SEW-------AN-------------Q---TSWHLSFLVDN---  153
1cwpa.pdb             108  -------------------------------------------QLAADLTIYLYSSA---  121
1smva.pdb             136  --------K---------T----SA--DYATAVGVDVNIATDL---VPARLVIALLDGSS  169
1stma.pdb              99  --------N--------TE----EAET----------------------ILAIDGLVSTK  116
2stv.pdb              138  LPGQLVNYNGATAVAAS---NGP-------------------------GAIFMLQIG-DS  168
2tbva.pdb             123  --------N--------DS-ATV---------------DQKLI---DLGQLGIATYGGAG  147
4sbva.pdb             139  --------K---------T----AT--DYATAVGVNANIGNIL---VPARLVTAMEGGSS  172
                                                                                       

1bmv1.pdb             154  PK----QS-TTFDVLLGISQNFEIAGNTLM-P-----AFSVPQ----  185
1cwpa.pdb             122  A-LT--EGDVIVHLEVEHV-R------PTFDD-----SFTPVY----  149
1smva.pdb             170  S---TAVAAGRIYDTYTIQ-M---IE-PTA-----SA-------LNL  196
1stma.pdb             117  G---ANAPSNTVIVTGCFR-L---AP-SEL--QSS------------  141
2stv.pdb              169  L-----VGLWDSSYEAVYT-D---A----------------------  184
2tbva.pdb             148  -----ADAVGELFLARSVT-L---YF-PQP-----TNTL----L---  172
4sbva.pdb             173  K---TAVNTGRLYASYTIR-L---IE-PIA-----AA-------LNL  199
                                                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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