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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:43:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/arginase.html
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#====================================
# Aligned_structures: 2
#   1: 1d3va.pdb
#   2: 2ceva.pdb
#
# Length:        313
# Identity:      126/313 ( 40.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    126/313 ( 40.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           20/313 (  6.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d3va.pdb               1  KPIEIIGAPFSKGQPRGGVEKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDV--PNDSP   58
2ceva.pdb               1  KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHE--   58
                           KPI IIG P   GQ R GV  GP A R AG  E L    Y   D GD             

1d3va.pdb              59  --FQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARVHPDLCVI  116
2ceva.pdb              59  QGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVI  118
                                  N   V  ANE LAA V      G    VLGGDHS AIG   G A     L VI

1d3va.pdb             117  WVDAHTDINTPLTTSSGNLHGQPVAFLLKELKGKFPDVPGFS-WVTPCISAKDIVYIGLR  175
2ceva.pdb             119  WYDAHGDVNTAETSPSGNIHGMPLAASLG----FGHPALTQIGGYSPKIKPEHVVLIGVR  174
                           W DAH D NT  T  SGN HG P A  L                  P I     V IG R

1d3va.pdb             176  DVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVF  235
2ceva.pdb             175  SLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKE-RTDGVHLSLDLDGLDPSD  233
                             D GE   I   GIK   M EVD LG   VMEET  YL        HLS D DGLDP  

1d3va.pdb             236  TPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALT  295
2ceva.pdb             234  APGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERN----KTASVAVALM  289
                            P  GTPV GGL YRE     E              EVNP L         T   AVAL 

1d3va.pdb             296  LSCFGTKREGNHK  308
2ceva.pdb             290  GSLFGEKLM----  298
                            S FG K      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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