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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:26:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/aldose.html
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#====================================
# Aligned_structures: 3
#   1: 1a5ca.pdb
#   2: 1ald.pdb
#   3: 1fbaa.pdb
#
# Length:        374
# Identity:      166/374 ( 44.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    283/374 ( 75.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/374 ( 10.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a5ca.pdb               1  -------LPADVAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYR   53
1ald.pdb                1  -PYQYPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYR   59
1fbaa.pdb               1  TTY-FNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYR   59
                                  l  e   EL  iAqkiVapGKGILAADESt ti KRlq Ig ENTeeNRr YR

1a5ca.pdb              54  DLLFGT-KGLGKFISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTD  112
1ald.pdb               60  QLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTN  119
1fbaa.pdb              60  QLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKVDKGVVPLFGSE  119
                           qLLf t   l   IsGvILFhETLyQKaddG Pf   lk kgii GIKVDKGvVpl gt 

1a5ca.pdb             113  EEKSTQGLDGLAERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASIC  172
1ald.pdb              120  GETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIG-E-HTPSALAIMENANVLARYASIC  177
1fbaa.pdb             120  DEVTTQGLDDLAARCAQYKKDGCDFAKWRCVLKIG-K-NTPSYQSILENANVLARYASIC  177
                            E tTQGLDgLaeRCaqYkKdGadFAKWRcVLkIg    tPs lsI EnAnvLARYASIC

1a5ca.pdb             173  QQNRLVPIVEPEILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGY  232
1ald.pdb              178  QQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGH  237
1fbaa.pdb             178  QSQRIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQ  237
                           QqnriVPIVEPEiLpDGdHdl rcq VTekVLaaVyKALsdhhvyLEGtLLKPNMVTaG 

1a5ca.pdb             233  ECTAKTTTQDVGFLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINAL-GPHPWAL  291
1ald.pdb              238  ACTQKFSHEEIAMATVTALRRTVPPAVTGITFLSGGQSEEEASINLNAINKCPLLKPWAL  297
1fbaa.pdb             238  SA-KKNTPEEIALATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWAL  296
                            c  K t eeia aTV aLRRTVPpAvtGvtFLSGGQSEEEAsvNLnaIN   l  PWAL

1a5ca.pdb             292  TFSYGRALQASVLNTWQGKKENVAKAREVLLQRAEANSLATYGKYKG----GAGG-----  342
1ald.pdb              298  TFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQA-----GAAA  352
1fbaa.pdb             297  TFSYGRALQASVLRAWAGKKENIAAGQNELLKRAKANGDAAQGKYVA----G---SAGAG  349
                           TFSYGRALQASvL aW GKKEN aaaqeellkRA ANslA qGKY               

1a5ca.pdb                  --------------     
1ald.pdb              353  SESLFVSNHAY---  363
1fbaa.pdb             350  S-GSLFVAN--HAY  360
                                         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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