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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:34:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/adh.html
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#====================================
# Aligned_structures: 5
#   1: 1cdoa.pdb
#   2: 1d1ta.pdb
#   3: 1teha.pdb
#   4: 2ohxa.pdb
#   5: 3huda.pdb
#
# Length:        379
# Identity:      152/379 ( 40.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    230/379 ( 60.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           13/379 (  3.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cdoa.pdb               1  ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD   60
1d1ta.pdb               1  GTAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTM-VS   59
1teha.pdb               1  --ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEG   58
2ohxa.pdb               1  STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL-VT   59
3huda.pdb               1  STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNL-VT   59
                             agkVIKCKAAV WE  kP sIEe EVapPka EvRIK  Atg C tD     g     

1cdoa.pdb              61  GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWA--N  118
1d1ta.pdb              60  KFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDI-T-  117
1teha.pdb              59  CFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQ-KIR--V  115
2ohxa.pdb              60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSM-  118
3huda.pdb              60  PLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGN-  118
                             PVi GHE aGIVES GeGVT   pGdkVIPLf pQCg C  C  P  N C        

1cdoa.pdb             119  ESPDVMSP--KETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCG  176
1d1ta.pdb             118  --G-RGVLADGTTRFTCKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCG  174
1teha.pdb             116  TQG-KGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCG  174
2ohxa.pdb             119  --P-RGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCG  175
3huda.pdb             119  --P-RGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG  175
                                g    gt RFTC Gk   hflgTSTFs YTVV    VAKID   Pl kVCL GCG

1cdoa.pdb             177  VSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF  236
1d1ta.pdb             175  FSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV  234
1teha.pdb             175  ISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF  234
2ohxa.pdb             176  FSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV  235
3huda.pdb             176  FSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKEL  235
                            STGyG AV  aKv pGStCaVFGLGgVGL   MGCk AGA RII vD NkDKF kAk  

1cdoa.pdb             237  GATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT  296
1d1ta.pdb             235  GATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVP  294
1teha.pdb             235  GATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVA  294
2ohxa.pdb             236  GATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP  295
3huda.pdb             236  GATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVP  295
                           GATec nP D  kPI eVL eMt ggVd sfE iG    M  aL  C    G SV VGv 

1cdoa.pdb             297  -DLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESV  355
1d1ta.pdb             295  PSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKI  354
1teha.pdb             295  ASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEI  354
2ohxa.pdb             296  PDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKI  355
3huda.pdb             296  PASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKI  355
                                    P  L  GRTWKG  fGG Ks   vPKlV     KK  lD  iTH lpf  i

1cdoa.pdb             356  NDAIDLMKHGKCIRTVLSL  374
1d1ta.pdb             355  SEGFELLNSGQSIRTVLTF  373
1teha.pdb             355  NKAFELMHSGKSIRTVVKI  373
2ohxa.pdb             356  NEGFDLLRSGESIRTILTF  374
3huda.pdb             356  NEGFDLLHSGKSIRTVLTF  374
                           n  f L  sG sIRTvl  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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