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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:16:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/aconitase.html
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#====================================
# Aligned_structures: 2
#   1: 1c96a.pdb
#   2: 1l5ja.pdb
#
# Length:        489
# Identity:       87/489 ( 17.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     87/489 ( 17.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           88/489 ( 18.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c96a.pdb               1  RPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAV   60
1l5ja.pdb               1  RGFSLAQKMVGRAC---GVKGI-RPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSA   56
                           R   L  K V           I R   Y       V  QD T  M               

1c96a.pdb              61  -PSTIHCDHLIEAQLGGEKDLRRAKD---I-NQEVYNFLATAGAKYGVGFWRPGSGIIHQ  115
1l5ja.pdb              57  DLVMQSFCHTAA--------------YPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIHS  102
                                   H                             L       G    RPG G IH 

1c96a.pdb             116  IILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLT  175
1l5ja.pdb             103  WLNRM-LLPDTVGTGGDSHTR-F-PI-GISFPAGSGLVAFAAATGVMPLDMPESVLVRFK  158
                                   P     G DSHT       GI    G        A     L  P    V   

1c96a.pdb             176  GSLSGWTSPKDVILKVAGIL-TV------------KGGTGAIVEYHGPGVDSISCTGMAT  222
1l5ja.pdb             159  GKMQPGITLRDLVHAIPLYAIK-QGLLTVEKKGKKNIFSGRILEIE--GLPDLKVEQAFE  215
                           G         D                            G I E    G           

1c96a.pdb             223  ICNMGAEIGATTSVFPYN-HRMKKYLSKTG-------------------RADIANLADEF  262
1l5ja.pdb             216  LTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLAN  275
                                AE  A       N      YL                       R          

1c96a.pdb             263  KDH-LVPDPGCHYDQVIEINLSEL-KPHINGPFTPDLAHPVAEVGSVAEKEGWP-LDIRV  319
1l5ja.pdb             276  PE-LLEADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQ---------GEKIDE  325
                               L  D    Y  VI I L     P    P  PD A P   V             I  

1c96a.pdb             320  GLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDV  379
1l5ja.pdb             326  VFIGSCMT-NIGHFRAAGKLLDAHK---GQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKS  381
                             IGSC                                P      A     GY  V    

1c96a.pdb             380  GGIVLANACGPCIGQWDR-KDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTA  438
1l5ja.pdb             382  GARIEIPGCSLCMGN---QARVA--DGATVVSTSTRNFPNRLG-TG-ANVFLASAELAAV  434
                           G       C  C G              T V    RNF  R         F  S E    

1c96a.pdb             439  LAIAGTLKF  447
1l5ja.pdb             435  AALIGKLPT  443
                            A  G L  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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