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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:15:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/acid_phosphat.html
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#====================================
# Aligned_structures: 3
#   1: 1ihp.pdb
#   2: 1rpt.pdb
#   3: 2hpaa.pdb
#
# Length:        467
# Identity:       54/467 ( 11.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    265/467 ( 56.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          158/467 ( 33.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ihp.pdb                1  SCDTVDQGYQCFSETSHLWGQYAPFFSLANESVISPEVPAGCRVTFAQVLSRHGARYPTD   60
1rpt.pdb                1  -----------------------------------------KELKFVTLVFRHGDRGPIE   19
2hpaa.pdb               1  -----------------------------------------KELKFVTLVFRHGDRSPID   19
                                                                    kelkFvtlvfRHGdR Pid

1ihp.pdb               61  SKGKKYSALIEEIQQ---NATTFDGKYAFLKTYNYSLGADDLTPFGEQELVNSGIKFYQR  117
1rpt.pdb               20  ---------------TFPNDPI------KESSWPQ--GFGQLTKWGMGQHYELGSYIRRR   56
2hpaa.pdb              20  ---------------TFPTDPI------KESSWPQ--GFGQLTQLGMEQHYELGEYIRKR   56
                                             ndpi      kesswpq  GfgqLT  Gm qhyelG yir R

1ihp.pdb              118  YESLTRNI----VPFIRSSGSSRVIASGKKFIEGFQS-TKLKDPRAQ--PGQSSPKIDVV  170
1rpt.pdb               57  YGRFLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWNP-RLLWQPIPVH--T  113
2hpaa.pdb              57  YRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNP-ILLWQPIPVH--T  113
                           Y  flnns    qvyIRStdvdRtlmSamtnlaalfp eg siwnp   lwQpiPvh  t

1ihp.pdb              171  ISEASSSNNT--LDPGTCTVFEDSELADTVEAN--FTATFVPSIRQRLENDLS---GVTL  223
1rpt.pdb              114  VSLS--EDRLLYLPFRDCPRFQEL--KSETLKSEEF-LKRLQPYKSFIDTLPSLSGF-ED  167
2hpaa.pdb             114  VPLS--EDQLLYLPFRNCPRFQEL--ESETLKSEEF-QKRLHPYKDFIATLGKLSGL-HG  167
                           vsls  ed l  Lpfr CprFqel   setlks  F  krl pyk fi tl s       

1ihp.pdb              224  TDTEV-----TYLMDMCSFDTISTTKLSPFCDLFTHDEWINYDYLQSLKKYYGHGAG-NP  277
1rpt.pdb              168  QD---LFEIWSRLYDPLYCESVHNFTLPTW---ATEDAMTKLKELSELSLLSLYGIHKQK  221
2hpaa.pdb             168  QD---LFGIWSKVYDPLYCESVHNFTLPSW---ATEDTMTKLRELSELSLLSLYGIHKQK  221
                           qD        s lyDplycesvhnftLp w   aTeD mtkl eLseLsllslyGih qk

1ihp.pdb              278  LGP-TQGVGYANELIARLTHSPVHDDTSSNHTLDSSPATFPLNSTLYADFSHDNGIISIL  336
1rpt.pdb              222  EKSRLQGGVLVNEILKNMKL------------ATQP-QK---ARKLIMYSAHDTTVSGLQ  265
2hpaa.pdb             222  EKSRLQGGVLVNEILNHMKR------------ATQI-PS---YKKLIMYSAHDTTVSGLQ  265
                           eks lQGgvlvNEil  mk             atq         kLimysaHDttvsglq

1ihp.pdb              337  FALGLYNGTKPLSTTTVENITQTDGFSSA--WTVPFASRLYVEMMQCQAEQEPLVRVLVN  394
1rpt.pdb              266  MALDVY-----------------------NGLLPPYASCHIMELYQDN--GGHFVEMYYR  300
2hpaa.pdb             266  MALDVY-----------------------NGLLPPYASCHLTELYFEK--GEYFVEMYYR  300
                           mALdvY                         llpPyASch  Elyq    ge fVemyyr

1ihp.pdb              395  ------DRVVPLHGCPVDALGRCTRDSFVRGLSFARSGG-DWAECFA  434
1rpt.pdb              301  NETQNEPYPLTLPGC-T---HSCPLEKFAELLDPVIP-QDWATECMG  342
2hpaa.pdb             301  NETQHEPYPLMLPGC-S---PSCPLERFAELVGPVIP-QDWSTECMT  342
                                 pypl LpGC      sCple Faell pvip q w tECm 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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