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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:14:34 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/aabp.html
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#====================================
# Aligned_structures: 3
#   1: 1ggga.pdb
#   2: 1hsla.pdb
#   3: 1lst.pdb
#
# Length:        245
# Identity:       49/245 ( 20.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    173/245 ( 70.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           31/245 ( 12.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ggga.pdb               1  -----LVVATDTAFVPFEFKQ-GDLYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQ   54
1hsla.pdb               1  AIPQKIRIGTDPTYAPFESKNAQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLK   60
1lst.pdb                1  ALPQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLK   60
                                 rigTDttyaPFesK   ge vGFDiDL  e cKr    ct v  dfdalIPsLk

1ggga.pdb              55  TKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVK-SVKDL---DGKVVAV  110
1hsla.pdb              61  AKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDI--QPTV--ASLKGKRVGV  116
1lst.pdb               61  AKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI--QPTL--ESLKGKHVGV  116
                           aKkiDai sslsITdkRqqeIaFsDklYaadsrl vakns i   pt      kGK VgV

1ggga.pdb             111  KSGTGSVDYAKANIKT---KDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFI-KTAGN  166
1hsla.pdb             117  LQGTTQETFGNEHWA-PKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVG  175
1lst.pdb              117  LQGSTQEAYANDNWR-TKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAG  175
                           lqGttqe yan nw      d v y nqDniYsdLtagR DAalqDevaasegf Kqp g

1ggga.pdb             167  GQFKAVGDSLEA------QQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTE  220
1hsla.pdb             176  KDYKFGGPAVK-DEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFD  234
1lst.pdb              176  KEYAFAGPSVK-DKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFN  234
                           k ykf Gpsvk        gtG glrK d ELr a nkAl elR dGTY k aKKyFdf 

1ggga.pdb                  -----     
1hsla.pdb             235  VYGG-  238
1lst.pdb              235  VYGDK  239
                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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