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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:42:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/UPF0076.html
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#====================================
# Aligned_structures: 3
#   1: 1jd1a.pdb
#   2: 1qd9a.pdb
#   3: 1qu9a.pdb
#
# Length:        129
# Identity:       39/129 ( 30.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     89/129 ( 69.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            6/129 (  4.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jd1a.pdb               1  TTLTPVICESAPAAAASYSHAMKVNNLIFLSGQIPVTPDNKLVEGSIADKAEQVIQNIKN   60
1qd9a.pdb               1  --TKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKA   58
1qu9a.pdb               1  --SKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKA   58
                              k v te APAAigpYsqg  vnNmi  SGQIPvtP    V gdia qa Qv  N Ka

1jd1a.pdb              61  VLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFN---THKPARSCVAVAALPLGVDM  117
1qd9a.pdb              59  VLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFD---THKPARSCVEVARLPKDALV  115
1qu9a.pdb              59  IVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARS-VEVARLPKDVKI  117
                           vlEaag s   vVK tvF aD n FAevN vY  yF    thkPARS VeVArLPkdv  

1jd1a.pdb             118  EMEAIAAER  126
1qd9a.pdb             116  EIEVIALVK  124
1qu9a.pdb             118  EIEAIAVRR  126
                           EiEaIA  r


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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