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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:43:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Transglutamin_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1evua.pdb
#   2: 1g0da.pdb
#
# Length:        727
# Identity:      224/727 ( 30.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    224/727 ( 30.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           81/727 ( 11.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1evua.pdb               1  ETSRTAFGGRRAVPPNNSNAAEDDLPTVEEFL-NVTSVHLFKERWDTNKVDHHTDKYENN   59
1g0da.pdb               1  --------------------------------GLIVDVNGRS---HENNLAHRTREIDRE   25
                                                                V         N   H T      

1evua.pdb              60  KLIVRRGQSFYVQIDFSRPYDPRRDLFRVEYVIGRYPQENKG-TYIPVPIVSELQSGKWG  118
1g0da.pdb              26  RLIVRRGQPFSITLQCSDSLP-PKHHLELVLHLGKRD-----EVVIKVQKE-HGARDKWW   78
                            LIVRRGQ F      S                G           I V         KW 

1evua.pdb             119  AKIVMREDRSVRLSIQSSPKCIVGKFRMYVAVWTPYG--VLRTSRNPETDTYILFNPWCE  176
1g0da.pdb              79  FNQQ-GAQDEILLTLHSPANAVIGHYRLAVLVMSPDGHIVERADK---ISFHMLFNPWCR  134
                                       L   S      G  R  V V  P G  V R           LFNPWC 

1evua.pdb             177  DDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTCLYVMDRAQM--  234
1g0da.pdb             135  DDMVYLPDESKLQEYVMNEDGVIYMGTWDYIRSIPWNYGQFEDYVMDICFEVLDNS--PA  192
                           DD VYL  E    EYV N  GVI  G    I    W YGQFED   D C  V D      

1evua.pdb             235  -------DLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSWDNIYAYGVPPSAWTGSVDILL  287
1g0da.pdb             193  ALKNSEMDIEHRSDPVYVGRTITAMVNSNGDRGVLTGRWEEPYTDGVAPYRWTGSVPILQ  252
                                  D   R  P  V R   AMVN   D GVL G W   Y  GV P  WTGSV IL 

1evua.pdb             288  EYRSS-ENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFLEEDGN  346
1g0da.pdb             253  QWSKAGVRPVKYGQCWVFAAVACTVLRCLGIPTRPITNFASAHDVDGNLSVDFLLNERLE  312
                                   PV YGQCWVFA V  T LRCLGIP R  TN  SAHD D NL  D  L E   

1evua.pdb             347  VNSKLTKD-SVWNYHCWNEAWMTRPDLPVGFGGWQAVDSTPQENSDG-MYRCGPASVQAI  404
1g0da.pdb             313  SLDSRQRSDSSWNFHCWVESWMSREDLPEGNDGWQVLDPTPQ-ELSDGEFCCGPCPVAAI  371
                                    S WN HCW E WM R DLP G  GWQ  D TPQ         CGP  V AI

1evua.pdb             405  KHGHVCFQFDAPFVFAEVNSDLIYITAKKDGTHVVENVDAT-HIGKLIVTKQIGGDGMMD  463
1g0da.pdb             372  KEGNLGVKYDAPFVFAEVNADTIYWIVQKDGQRRKI-TEDHASVGKNISTKSVYGNHRED  430
                           K G      DAPFVFAEVN D IY    KDG             GK I TK   G    D

1evua.pdb             464  ITDTYKFQEGQEEERLALETALMYGAKKPLNTS-NVDMDFEVENAVLGKDFKLSITFRNN  522
1g0da.pdb             431  VTLHYKYPEGSQKEREVYKKAG---RRV-----TRLQLSIKHAQPVFGTDFDVIVEVKNE  482
                            T  YK  EG   ER     A                        V G DF       N 

1evua.pdb             523  SHNRYTITAYLSANITFYTGVPKAEFKKETFDVTLEPLSFKKEAVLIQAGEYMGQLLEQA  582
1g0da.pdb             483  GGRDAHAQLTMLAMAVTYNSLRRGECQRKTISVTVPAHKAHKEVMRLHYDDYVRCVSEHH  542
                                       A    Y      E    T  VT       KE        Y     E  

1evua.pdb             583  SLHFFVTARINETRDVLAKQKSTVLTIPEIIIKVRGTQVVGSDMTVTVQFTNPLKETLRN  642
1g0da.pdb             543  LIRVKALLDAP---GPIMTVANIPLSTPELLVQVPGKAVVWEPLTAYVSFTNPLPVPLKG  599
                                                   L  PE    V G  VV    T  V FTNPL   L  

1evua.pdb             643  VWVHLDGPGVTRPMKKMFR-EIRPNSTVQWEEVCRPWVSGHRKLIASMSSDSLRHVYGEL  701
1g0da.pdb             600  GVFTLEGAGLLSATQIHVNGAVAPSGKVSVKLSFSPMRTGVRKLLVDFDSDRLKDVKGVT  659
                               L G G              P   V       P   G RKL     SD L  V G  

1evua.pdb             702  DVQIQR-  707
1g0da.pdb             660  TVVVHKK  666
                            V     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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